LncCeRBase

Welcome to the LncCeRBase DataBase!
LncRNA MiRNA Gene Gene name Pathway Name Description Title Disease/Tissue Journal PubMed ID
UCA1 miR-204 ATF2 ATF2CRE-BP1;CREB-2;CREB2;HB16;TREB7 details
Dopaminergic synapse;MAPK signaling pathway;PI3K-Akt signaling pathway;Insulin secretion; Estrogen signaling pathway;Cocaine addiction;Epstein-Barr virus infection; Amphetamine addiction;Alcoholism; Hepatitis B;Influenza A; HTLV-I infection;Viral carcinogenesis
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UCA1 directly interacted with miR-204 and decreased the binding of miR-204 to ATF2 3'UTR, which suppressed the degradation of ATF2 mRNA by miR-204.
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Long non-coding RNA UCA1 promotes cell progression by acting as a competing endogenous RNA of ATF2 in prostate cancer
Prostate Cancer Am J Transl Res 28337266
hsa_circ_0001859 miR-204 ATF2 ATF2CRE-BP1;CREB-2;CREB2;HB16;TREB7 details
Dopaminergic synapse;MAPK signaling pathway;PI3K-Akt signaling pathway;Insulin secretion; Estrogen signaling pathway;Cocaine addiction;Epstein-Barr virus infection; Amphetamine addiction;Alcoholism; Hepatitis B;Influenza A; HTLV-I infection;Viral carcinogenesis
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Silencing of hsa_circ_0001859 suppressed ATF2 expression and decreased inflammatory activity in SW982 cells. Hsa_circ_0001859 could compete with ATF2 for miR-204/211.
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Hsa_circ_0001859 Regulates ATF2 Expression by Functioning as an MiR-204/211 Sponge in Human Rheumatoid Arthritis
Human Rheumatoid Arthritis J Immunol Res 29577053
MALAT1 miR-204 CXCR4 CXCR4;CD184;D2S201E;FB22;HM89;HSY3RR;LAP-3;LAP3;LCR1;LESTR;NPY3R;NPYR;NPYRL;NPYY3R;WHIM;WHIMS details
Cytokine-cytokine receptor interaction;Chemokine signaling pathway;Endocytosis;Axon guidance;Leukocyte transendothelial migration;Intestinal immune network for IgA production
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By using online tools and a series of mechanistic analysis, we also demonstrated that miR-204-dependent CXCR4 regulation was required in MALAT1 modulating HCCA cell growth, migration and invasion. Taken together, our data indicated that MALAT1 might play an oncogenic role in HCCA through miR-204-dependent CXCR4 regulation, and could be regarded as a therapeutic target in HCCA.
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Long Non-Coding RNA MALAT1 Interacted with miR-204 to Modulates Human Hilar Cholangiocarcinoma Proliferation, Migration and Invasion by Targeting CXCR4
Hilar Cholangiocarcinoma J Cell Biochem 28059437
MALAT1 miR-204 CXCR4 CXCR4;CD184;D2S201E;FB22;HM89;HSY3RR;LAP-3;LAP3;LCR1;LESTR;NPY3R;NPYR;NPYRL;NPYY3R;WHIM;WHIMS details
Cytokine-cytokine receptor interaction;Chemokine signaling pathway;Endocytosis;Axon guidance;Leukocyte transendothelial migration;Intestinal immune network for IgA production
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Knockdown of MALAT1 inhibited the proliferation, migration, and invasion of human HCCA cell. In addition, chemokine receptor-4 (CXCR4) was involved in MALAT1 induced human HCCA growth, migration, and invasion. By using online tools and a series of mechanistic analysis, we also demonstrated that miR-204-dependent CXCR4 regulation was required in MALAT1 modulating HCCA cell growth, migration and invasion.
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Long Non-Coding RNA MALAT1 Interacted with miR-204 to Modulates Human Hilar Cholangiocarcinoma Proliferation, Migration and Invasion by Targeting CXCR4
Human Hilar Cholangiocarcinoma J Cell Biochem 28059437
ADNCR miR-204 SIRT1 SIRT1;SIR2;SIR2L1;hSIR2 details
Amphetamine addiction
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Mechanistically, ADNCR inhibited adipocyte differentiation by functioning as a competing endogenous RNA (ceRNA) for miR-204, thereby augmenting the expression of the miR-204 target gene, SIRT1, which is known to inhibit adipocyte differentiation and adipogenic gene expression by docking with NCoR and SMART to repress PPARγ activity
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Long non-coding RNA ADNCR suppresses adipogenic differentiation by targeting miR-204
Adipogenic Biochim Biophys Acta 27156885
MALAT1 miR-204 SLUG SNAI2;SLUG;SLUGH1;SNAIL2;WS2D details
Hippo signaling pathway;Adherens junction
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In particular, MALAT1 upregulated the expression of miR-204 target gene SLUG through competitively 'spongeing' miR-204.
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LncRNA MALAT1 exerts oncogenic functions in lung adenocarcinoma by targeting miR-204
Lung Adenocarcinoma Am J Cancer Res 27294002
MALAT1 miR-204 Smad4 SMAD4;DPC4;JIP;MADH4;MYHRS details
Pancreatic cancer;Cell cycle;Wnt signaling pathway;TGF-beta signaling pathway;Hippo signaling pathway;Adherens junction;Hepatitis B;HTLV-I infection;Pathways in cancer;Colorectal cancer;Chronic myeloid leukemia
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In vitro experiments revealed that MALAT1 acted as a positive regulator of osteogenic differentiation by repressing miR-204 expression and activity and thereby promoting expression of osteoblast-specific markers, including alkaline phosphatase, mineralized bone matrix formation and osteocalcin. Mechanistically, we identified Smad4 as a direct target of miR-204. Importantly, MALAT1 could directly interact with miR-204 and overexpression of miR-204 efficiently reversed the upregulation of Smad4 induced by MALAT1. Thus, MALAT1 positively regulated the expression of Smad4 through sponging miR-204, and promoted osteogenic differentiation of VICs.
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LncRNA MALAT1 sponges miR-204 to promote osteoblast differentiation of human aortic valve interstitial cells through up-regulating Smad4.
Calcific aortic valve disease Int J Cardiol 28522163
MALAT1 miR-204 Smad4 SMAD4;DPC4;JIP;MADH4;MYHRS details
Cell cycle; Wnt signaling pathway;TGF-beta signaling pathway;Hippo signaling pathway;Adherens junction;Hepatitis B;HTLV-I infection;Pathways in cancer; Colorectal cancer;Pancreatic cancer;Chronic myeloid leukemia
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Mechanistically, we identified Smad4 as a direct target of miR-204. Importantly, MALAT1 could directly interact with miR-204 and overexpression of miR-204 efficiently reversed the upregulation of Smad4 induced by MALAT1.
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LncRNA MALAT1 sponges miR-204 to promote osteoblast differentiation of human aortic valve interstitial cells through up-regulating Smad4.
Calcific aortic valve disease Int J Cardiol 28522163
UCA1 miR-204 Sox4 SOX4;EVI16 details
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UCA1 directly interacted with miR-204 and decreased the binding of miR-204 to Sox4 3'UTR, which suppressed the degradation of Sox4 mRNA by miR-204.
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lncRNA-UCA1 enhances cell proliferation through functioning as a ceRNA of Sox4 in esophageal cancer
Esophageal Cancer Oncol Rep 27667646
NEAT1 miR-204 ZEB1 ZEB1;AREB6;BZP;DELTAEF1;FECD6;NIL2A;PPCD3;TCF8;ZFHEP;ZFHX1A details
Transcriptional misregulation in cancer
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ZEB1 was identified as a downstream target of miR-204 and NEAT1 upregulated ZEB1 expression by negatively regulating miR-204 expression.
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The long non-coding RNA NEAT1 regulates epithelial to mesenchymal transition and radioresistance in through miR-204/ZEB1 axis in nasopharyngeal carcinoma
Nasopharyngeal Carcinoma Tumour Biol 27020592