LncCeRBase

Welcome to the LncCeRBase DataBase!
LncRNA MiRNA Gene Gene name Pathway Name Description Title Disease/Tissue Journal PubMed ID
PVT1 miR-195 BCL2 BCL2;Bcl-2;PPP1R50 details
HIF-1 signaling pathway;NF-kappa B signaling pathway;Protein processing in endoplasmic reticulum;Pathways in cancer;Small cell lung cancer;Prostate cancer;PI3K-Akt signaling pathway;Apoptosis;Focal adhesion; Neurotrophin signaling pathway;Cholinergic synapse;Amyotrophic lateral sclerosis (ALS);Colorectal cancer;Hepatitis B;Epstein-Barr virus infection; Toxoplasmosis;Tuberculosis
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Moreover, silencing PVT1 by siRNA inhibited BCL2, CCND1, and FASN protein expression via miR-195 in osteosarcoma cells, and BCL2 inhibited the si-PVT1#1-induced apoptosis of U2OS cells.
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Long non-coding RNA PVT1 promotes osteosarcoma development by acting as a molecular sponge to regulate miR-195
Osteosarcoma Oncotarget 27813492
hsa_circ_0001564 miR-29c-3p CANX CANX;CNX;IP90;P90 details
Protein processing in endoplasmic reticulum;Phagosome;Antigen processing and presentation;HTLV-I infection
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Hsa_circ_0001564, located at 5q35.3 and its associated-gene symbol is CANX, was one of the significantly overexpressed circRNAs in osteosarcoma tissue, as well as in osteosarcoma cell lines. In functional experiments, hsa_circ_001564 knockdown significantly suppressed the proliferation activity, induced cell cycle arrest in G0/G1 phase, and promoted apoptosis in HOS and MG-63 cells. Subsequently, we explored the probable mechanism of hsa_circ_001564, and fortunately, bioinformatics analysis revealed that miR-29c-3p contained the complementary binding region with hsa_circ_0001564, which was confirmed by dual-luciferase reporter assa
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Circular RNA hsa_circ_0001564 regulates osteosarcoma proliferation and apoptosis by acting miRNA sponge.
Osteosarcoma Biochem Biophys Res Commun 29229385
PVT1 miR-195 CCND1 CCND1;BCL1;D11S287E;PRAD1;U21B31 details
Cell cycle;p53 signaling pathway;Endometrial cancer;Melanoma;Thyroid cancer;PI3K-Akt signaling pathway;Pancreatic cancer;Wnt signaling pathway;Hippo signaling pathway;Prostate cancer;Acute myeloid leukemia;Focal adhesion;Viral myocarditis;Viral carcinogenesis;Colorectal cancer;Jak-STAT signaling pathway;Hepatitis B;Measles;Proteoglycans in cancer;Bladder cancer;Non-small cell lung cancer;HTLV-I infection;Small cell lung cancer;Pathways in cancer;Glioma;Chronic myeloid leukemia
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Moreover, silencing PVT1 by siRNA inhibited BCL2, CCND1, and FASN protein expression via miR-195 in osteosarcoma cells, and BCL2 inhibited the si-PVT1#1-induced apoptosis of U2OS cells.
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Long non-coding RNA PVT1 promotes osteosarcoma development by acting as a molecular sponge to regulate miR-195
Osteosarcoma Oncotarget 27813492
PVT1 miR-195 FASN FASN;FAS;OA-519;SDR27X1 details
Fatty acid biosynthesis;Metabolic pathways; Insulin signaling pathway
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Moreover, silencing PVT1 by siRNA inhibited BCL2, CCND1, and FASN protein expression via miR-195 in osteosarcoma cells, and BCL2 inhibited the si-PVT1#1-induced apoptosis of U2OS cells.
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Long non-coding RNA PVT1 promotes osteosarcoma development by acting as a molecular sponge to regulate miR-195
Osteosarcoma Oncotarget 27813492
PVT1 miR-497 HK2 HK2;HKII;HXK2 details
Starch and sucrose metabolism;Glycolysis / Gluconeogenesis;Fructose and mannose metabolism;Galactose metabolism;Amino sugar and nucleotide sugar metabolism;Butirosin and neomycin biosynthesis;Metabolic pathways;HIF-1 signaling pathway;Insulin signaling pathway;Type II diabetes mellitus ;Carbohydrate digestion and absorption
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Functionally, knockdown of PVT1 exerted tumor-suppressive effect by suppressing cell proliferation, cell cycle progression, and invasion in vitro, whereas miR-497 inhibitor partially abolished the inhibition effect of si-PVT1. Overexpression of HK2 attenuated the miR-497 induced inhibition of cell growth and motility. Taken together, these findings suggested that PVT1 contributes to OS cell glucose metabolism, cell proliferation, and motility through the miR-497/HK2 pathway, and revealed a novel relation between lncRNA and the alteration of glycolysis in OS cells.
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Long non-coding RNA PVT1 promotes glycolysis and tumor progression by regulating miR-497/HK2 axis in osteosarcoma.
Osteosarcoma Biochem Biophys Res Commun 28602700
MALAT1 miR-129-5p HMGB1 HMGB1;HMG1;HMG3;SBP-1 details
Base excision repair
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Moreover, knockdown of MALAT1 decreased HMGB1 expression, inhibited OS cell growth and promoted apoptosis, while miR-142-3p and miR-129-5p inhibitor partly restored the inhibitory effect of MALAT1 knockdown on HMGB1 expression, OS cell growth and the promotion of apoptosis.
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MALAT1 promotes osteosarcoma development by regulation of HMGB1 via miR-142-3p and miR-129-5p
Osteosarcoma Cell Cycle 28346809
MALAT1 miR-142-3p HMGB1 HMGB1;HMG1;HMG3;SBP-1 details
Base excision repair
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Moreover, knockdown of MALAT1 decreased HMGB1 expression, inhibited OS cell growth and promoted apoptosis, while miR-142-3p and miR-129-5p inhibitor partly restored the inhibitory effect of MALAT1 knockdown on HMGB1 expression, OS cell growth and the promotion of apoptosis.
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MALAT1 promotes osteosarcoma development by regulation of HMGB1 via miR-142-3p and miR-129-5p
Osteosarcoma Cell Cycle 28346809
LINC00161 miR-645 IFIT2 IFIT2;G10P2;GARG-39;IFI-54;IFI-54K;IFI54;IFIT-2;ISG-54 K;ISG-54K;ISG54;P54;cig42 details
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Elevated LINC00161 increased cisplatin-induced apoptosis and reversed the cisplatin-resistant phenotype of osteosarcoma cells by upregulating IFIT2. Further mechanistic studies revealed that LINC00161 could sponge endogenous miR-645 and inhibit its activity leading to IFIT2 increase. In addition, we identified that LINC00161 enhanced cisplatin-induced apoptosis through regulation of the miR-645-IFIT2 pathway.
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Long non-coding RNA LINC00161 sensitises osteosarcoma cells to cisplatin-induced apoptosis by regulating the miR-645-IFIT2 axis
Osteosarcoma Cancer Lett 27609068
circ_0009910 miR-449a IL6R IL6R;CD126;IL-6R-1;IL-6RA;IL6Q;IL6RA;IL6RQ;gp80 details
Cytokine-cytokine receptor interaction;HIF-1 signaling pathway;PI3K-Akt signaling pathway;Jak-STAT signaling pathway;Hematopoietic cell lineage
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Direct interaction of circ_0009910 and miR-449a was confirmed through dual-luciferase assays. Moreover, IL6R was predicted as a potential target of miR-449a. Overexpression of miR-449a decreased the mRNA and protein levels of IL6R.
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Hsa_circ_0009910 promotes carcinogenesis by promoting the expression of miR-449a target IL6R in osteosarcoma
Osteosarcoma Biochem Biophys Res Commun 29117539
XIST miR-21-5p PDCD4 PDCD4;:H731 details
Proteoglycans in cancer
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Finally, we affirmed that XIST regulated PDCD4 expression by competitively binding to miR-21-5p. XIST inhibited cell proliferation and cell mobility by competitively binding to miR-21-5p and upregulating PDCD4 in OS.
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Long non-coding RNA XIST regulates PDCD4 expression by interacting with miR-21-5p and inhibits osteosarcoma cell growth and metastasis.
Osteosarcoma Int J Oncol 29048648
TUG1 miR-9-5p POU2F1 POU2F1;OCT1;OTF1;oct-1B details
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Moreover, TUG1 overturned the effect of miR-9-5p on the proliferation, colony formation, cell cycle arrest, and apoptosis in osteosarcoma cells, which involved the derepression of POU class 2 homeobox 1 (POU2F1) expression.
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Long non-coding RNA TUG1 contributes to tumorigenesis of human osteosarcoma by sponging miR-9-5p and regulating POU2F1 expression
Osteosarcoma Tumour Biol 27658774
XIST miR-320b RAP2B details
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Furthermore, XIST could directly bind to miR-320b and repressed miR-320b expression. Moreover, XIST overexpression significantly relieved the inhibition on OS cell proliferation and invasion mediated by miR-320b overexpression, which involved the derepression Ras-relate protein RAP2B.
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Long Non-Coding RNA XIST Promotes Osteosarcoma Progression by Targeting Ras-Related Protein RAP2B via miR-320b
Osteosarcoma Oncol Res 28409547
TUG1 miR-335-5p ROCK1 ROCK1;P160ROCK;ROCK-I details
Vascular smooth muscle contraction;Chemokine signaling pathway;Proteoglycans in cancer; Wnt signaling pathway;TGF-beta signaling pathway;Axon guidance;Focal adhesion;Leukocyte transendothelial migration;Regulation of actin cytoskeleton;Pathogenic Escherichia coli infection;Shigellosis;Salmonella infection
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The subsequent luciferase assay verified TUG1 was a target of miR-335-5p. Furthermore, the results of a real-time quantitative PCR showed that TUG1 and miR-335-5p could affect each other's expression. respectively. Finally, we affirmed that TUG1 affected ROCK1 expression and ROCK1-mediated migration/invasion by working as a competitive endogenous RNA (ceRNA) via miR-335-5p.
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Long non-coding RNA TUG1 promotes migration and invasion by acting as a ceRNA of miR-335-5p in osteosarcoma cells
Osteosarcoma Cancer Sci 28205334
H19 miR-200a ZEB1 ZEB1;AREB6;BZP;DELTAEF1;FECD6;NIL2A;PPCD3;TCF8;ZFHEP;ZFHX1A details
Transcriptional misregulation in cancer
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
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H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415
H19 miR-200b ZEB1 ZEB1;AREB6;BZP;DELTAEF1;FECD6;NIL2A;PPCD3;TCF8;ZFHEP;ZFHX1A details
Transcriptional misregulation in cancer
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
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H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415
H19 miR-200c ZEB1 ZEB1;AREB6;BZP;DELTAEF1;FECD6;NIL2A;PPCD3;TCF8;ZFHEP;ZFHX1A details
Transcriptional misregulation in cancer
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
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H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415
H19 miR-200s ZEB1 ZEB1;AREB6;BZP;DELTAEF1;FECD6;NIL2A;PPCD3;TCF8;ZFHEP;ZFHX1A details
Transcriptional misregulation in cancer
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
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H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415
ZEB1-AS1 miR-200s ZEB1 ZEB1;AREB6;BZP;DELTAEF1;FECD6;NIL2A;PPCD3;TCF8;ZFHEP;ZFHX1A details
Transcriptional misregulation in cancer
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Our results showed that ZEB1-AS1 functions as a molecular sponge for miR-200s and relieves the inhibition of ZEB1 caused by miR-200s.
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Interplay between Long Noncoding RNA ZEB1-AS1 and miR-200s Regulates Osteosarcoma Cell Proliferation and Migration
Osteosarcoma J Cell Biochem 28075045
H19 miR-200a ZEB2 ZEB2;HSPC082;SIP-1;SIP1;SMADIP1;ZFHX1B details
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
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H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415
H19 miR-200b ZEB2 ZEB2;HSPC082;SIP-1;SIP1;SMADIP1;ZFHX1B details
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
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H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415
H19 miR-200c ZEB2 ZEB2;HSPC082;SIP-1;SIP1;SMADIP1;ZFHX1B details
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
details
H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415
H19 miR-200s ZEB2 ZEB2;HSPC082;SIP-1;SIP1;SMADIP1;ZFHX1B details
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Furthermore, we showed that H19 promotes metastasis through upregulation of ZEB1 and ZEB2 by competitively binding the miR-200 family.
details
H19 Functions as a ceRNA in Promoting Metastasis Through Decreasing miR-200s Activity in Osteosarcoma
Osteosarcoma DNA Cell Biol 27008415