LncCeRBase

Welcome to the LncCeRBase DataBase!
LncRNA MiRNA Gene Gene name Pathway Name Description Title Disease/Tissue Journal PubMed ID
HOTAIR miR-1 CCND1 CCND1;BCL1;D11S287E;PRAD1;U21B31 details
Cell cycle;p53 signaling pathway;Endometrial cancer;Melanoma;Thyroid cancer;PI3K-Akt signaling pathway;Pancreatic cancer;Wnt signaling pathway;Hippo signaling pathway;Prostate cancer;Acute myeloid leukemia;Focal adhesion;Viral myocarditis;Viral carcinogenesis;Colorectal cancer;Jak-STAT signaling pathway;Hepatitis B;Measles;Proteoglycans in cancer;Bladder cancer;Non-small cell lung cancer;HTLV-I infection;Small cell lung cancer;Pathways in cancer;Glioma;Chronic myeloid leukemia
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Furthermore, HOTAIR overturned the effect of miR-1 on the proliferation and cell cycle profile in ESCC cells, which involved the derepression of cyclin D1 (CCND1) expression, a target of miR-1.
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Long Noncoding RNA HOTAIR Controls Cell Cycle by Functioning as a Competing Endogenous RNA in Esophageal Squamous Cell Carcinoma
Esophageal Squamous Cell Carcinoma Transl Oncol 27816685
CCAT1 miR-7 HOXB13 HOXB13;PSGD details
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In cytoplasm, CCAT1 regulates HOXB13 as a molecular decoy for miR-7, a microRNA that targets both CCAT1 and HOXB13, thus facilitating cell growth and migration.
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H3K27 acetylation activated-long non-coding RNA CCAT1 affects cell proliferation and migration by regulating SPRY4 and HOXB13 expression in esophageal squamous cell carcinoma
Esophageal Squamous Cell Carcinoma Nucleic Acids Res 27956498
SOX2OT miR-211 SOX2 SOX2;ANOP3;MCOPS3 details
Hippo signaling pathway
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From the list of potential candidate miRNAs, miR-211 was found to have complementary sequences to SOX2OT and SOX2 transcripts.
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Down-Regulatory Effects of miR-211 on Long Non-Coding RNA SOX2OT and SOX2 Genes in Esophageal Squamous Cell Carcinoma
Esophageal Squamous Cell Carcinoma Cell J 26862518
CCAT1 miR-7 SPRY4 SPRY4;HH17 details
Jak-STAT signaling pathway
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Mechanistic investigations found that CCAT1 could serve as a scaffold for two distinct epigenetic modification complexes (5? domain of CCAT1 binding Polycomb Repressive Complex 2 (PRC2) while 3? domain of CCAT1 binding SUV39H1) and modulate the histone methylation of promoter of SPRY4 (sprouty RTK signaling antagonist 4) in nucleus
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H3K27 acetylation activated-long non-coding RNA CCAT1 affects cell proliferation and migration by regulating SPRY4 and HOXB13 expression in esophageal squamous cell carcinoma
Esophageal Squamous Cell Carcinoma Nucleic Acids Res 27956498