Li Lab:

Insect Genomic and Bioinformatics

 
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Databases

  • ChiloDB:a genomic and transcriptomic database for Chilo suppressalis.
  • iPathCons and iPathDB: an improved insect pathway construction tool and the database.

Software Tools

  • Triplet-SVM classifier :This program is developed for predicting a query sequence with hairpin structure as a real miRNA precursor or not. The triplet-SVM classifier analyzes the triplet elements of the query and predicts it using a SVM classifier. The SVM classifier is previously trained based on the triplet element features of a set of real miRNA precursors and a set of pseudo-miRNA hairpins.
  • OMIGA :OMIGA is a pipeline for genome annotation which is running on linux platform.
  • LR50 :a pipeline for assessing the quality of insect transcriptomes which generated by sequencing technology and it is running on Linux platform.
  • Piano : The program Piano is developed for predicting piRNAs.