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Gene detail [Fasta]

Species Harpegnathos saltator
GeneHSAL17447
Positionscaffold427:119925..123781[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/hsal_33/?name=HSAL17447
sequence mRNA: 
>HSAL17447-RA
ATGTCCAGCAATCCTCAGTGGAAAACGTTCCAGCCGCCAATCATGAACTCTGACCCAGCAATACTTGACTATAAGTCTAT
GGCTATACCAAGTCCTAAAGCCATAACGGGATCTCATCAGTCGACGACTAACAACTATCGAAATGGTACCAACTACAGTG
GTGATCACTATATGGGTTCACCTCCTGAATGCGGTAAAAATTCTACTACTACTAACTATGGAAGTTATCCTGGTGCACAA
ACATCACCACGCAACGGCGCCACAAGATTTCCATTTGAATTCACGAGCATGGAGACGAATGCTGGTTACACTGGCGAACC
TGCGGCAAATAATCCTTCCTATCAGGATCAGTCTGCGAATCAAGGGACACGAGAAACTGGAATAATCGAGAAATTATTGC
ATTCTTATGGGTTCATACAATGCTGTGAAAGACAGGCAAGACTGTTTTTTCATTTTAGCCAATTTAGTGGTAACATAGAG
CATTTGAAGATTGGAGATCCAGTGGAGTTTGAAATGACTTACGATCGGCGAACAGGCAAGCCTATTGCTAGTACTGTTAG
CAAGATCGCTCCAGTGGCATTAGGTGATCAACGATGCATCGGTAATGTAACAACGGAATTACAAGCGAGCGGTGACTCAC
AAGGACGTATCAGTTATGAAAATCGAGGAGAATGCTTTTTTCTGCCATATACCAAAGATGATGTCGAAGGGAACGTCACT
TTGCGTGCTGGTGATAAAGTGTCATTTCAAATTGCTACCAATCAACGAGGAAACTTGGGCGCGTGTCACGTAAGGCTGGA
GAATCCAGCACATCCGGTTCGTTATCGCGGAGTGGTGTGTTCAATGAAAGAAAATTTTGGTTTTATTGAGCGTGCCGACG
TAGTTAAGGAGATATTCTTCCACTTTAGTGAGGCCAAGTCAATGAAAGAGGAACTTAGGCTAGGAGATGATGTGGAATTT
ATAATACAGACACGCAATGGAAAAGAGGTAGCTTGTAACATTACAAAGTTACCACCCGGCTCAATCGTATTTGAAGAAGT
CAGCAATGAAGTGGTGAAAGGACAAGTGTTAAAACCGTTAGAGAGAGGTACCGCAGCTCGTCATCAAAATGACCCGTTAC
CTGGACGTATCCGATATAGAGACAGTGAAGATCATTCTGAAGTTGAGGTACCTTTTGGTGATAAGGATCAGAAGGGAGAT
TTTACACTTAGGCATGGAGACTGGGTTCAGTTTCGTATTGCAACAGACACGAGAGATCAGCTCAAAAGAGCTACAGAGAT
ATTATTATTACCAGAATCTTTCACTGTGTCTGGGGAAAGACGGGAGCAAGGTATTATCGCCGCTCTTAAGGACGGATTTG
GCTTTATTCGTTGTGTAGATCGAGATGCGAGACTTTTCTTTCACTTTAACGAGGTTCTCGATGTTGATAGAGAAATTAGT
GTAGGGGATGAAGTTGAATTTACGATCATACAAGACCCTTCATCATCATTCTCGAATAATCGACAAAGTGCTATTAGGCT
GAAACATTTGCCAGCTGGTACCGTACAATTTGAAACTATTATAGAGACGGATATATTAGGTACTGTAATACAGGACACAA
GTTCAGTCGAACCTGGCCTTATTGGTTATGGCCAGCAGAAGAGCATTATTTTCTTCGCTAAAGATTGCGACCCTAAAAAT
ATCCCGAAATTGAATGATAAGGTGATGTTCAGTGTTTGTCAAGTAAAACGAAATAAAGAACTTGTTGCTGTTGACATATT
TTTAATAAATGCTGCTGGTGAGAAAATTCAAAATACAAACAAAAAATCAAATGGACAAGTTTGTCAAGGTTTTATTGCTG
CTCTTAAGGACGGATTTGGCTTTATTGAGACAGTAAATCACGATAAAGAAATATTTTTCCACTACAGTAACTTTGAAGGA
GATGCCAGTGCGTTGGAATTGGGAGCTGATATCGAATGTACAATTAGTAGTTCTGGCAATGGAAGAGGTTCTGGAGGTTG
CGTAGCCGCCGATCATGTTAAATTGGTGCCTCGTGGAAGTATTCCTAGGCCGACACCAGTTAGCGAAGTGCTCGATGGCA
CTGTCATACGACCATTGCGAAGCGCGAATCCCGAGCAGACTGAGTACGCCGGCCTGATAAAGATCAATCCTACTAACGAA
GACGAGGAGACGCAGGAATATGAATTCGGAATTATGGGTTTGTCTAACAAACGGGAGTTATTGCAAGCTGGTGATCCTGT
GCAACTGCAAGTAGATTCAGCCGGCCATGCGTGTAATATCGTAGCCGTCAGAAAAAAGAGAAGAGCGACCGTGGACGCTG
TGAAGGGCCCCTTCGGCTTCCTGGCCTATGAAGTCGATGAGGGCAAAAAATTATTCTTCCACATAAGTGAGGTTAGAGAT
CACGCCACGTTGCAACCAGGTGACTCGGTTGAATTCGTCTTGGTTACTAATCAACGCACCGGCAAATCTTCGGCGTGCAA
CGTAACTCGATTAAGCGATGCGGTCCAGCAACGACCTGAGCGTCTGATAAGTCGATTACGTACTATATCTATGGAAGATA
CAGGCCCAAAATTGACAGTAGTCAGGCAACCGAGAGGGCCCGATGGTACGCGCGGCTTTAGCCAAGAAAGATGCCAGCAC
ACTCCTGGTGCCATAGAGGAGTAA
PEP: 
>HSAL17447-PA
MSSNPQWKTFQPPIMNSDPAILDYKSMAIPSPKAITGSHQSTTNNYRNGTNYSGDHYMGSPPECGKNSTTTNYGSYPGAQ
TSPRNGATRFPFEFTSMETNAGYTGEPAANNPSYQDQSANQGTRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIE
HLKIGDPVEFEMTYDRRTGKPIASTVSKIAPVALGDQRCIGNVTTELQASGDSQGRISYENRGECFFLPYTKDDVEGNVT
LRAGDKVSFQIATNQRGNLGACHVRLENPAHPVRYRGVVCSMKENFGFIERADVVKEIFFHFSEAKSMKEELRLGDDVEF
IIQTRNGKEVACNITKLPPGSIVFEEVSNEVVKGQVLKPLERGTAARHQNDPLPGRIRYRDSEDHSEVEVPFGDKDQKGD
FTLRHGDWVQFRIATDTRDQLKRATEILLLPESFTVSGERREQGIIAALKDGFGFIRCVDRDARLFFHFNEVLDVDREIS
VGDEVEFTIIQDPSSSFSNNRQSAIRLKHLPAGTVQFETIIETDILGTVIQDTSSVEPGLIGYGQQKSIIFFAKDCDPKN
IPKLNDKVMFSVCQVKRNKELVAVDIFLINAAGEKIQNTNKKSNGQVCQGFIAALKDGFGFIETVNHDKEIFFHYSNFEG
DASALELGADIECTISSSGNGRGSGGCVAADHVKLVPRGSIPRPTPVSEVLDGTVIRPLRSANPEQTEYAGLIKINPTNE
DEETQEYEFGIMGLSNKRELLQAGDPVQLQVDSAGHACNIVAVRKKRRATVDAVKGPFGFLAYEVDEGKKLFFHISEVRD
HATLQPGDSVEFVLVTNQRTGKSSACNVTRLSDAVQQRPERLISRLRTISMEDTGPKLTVVRQPRGPDGTRGFSQERCQH
TPGAIEE
Swiss-ProtCold shock domain-containing protein E1
SUPERFAMILYSSF50249  Nucleic acid-binding proteins superfamily     
Gene3DG3DSA:2.40.50.140     
PfamPF00313  CSD; 'Cold-shock' DNA-binding domain     
SMARTSM00357     
ProSitePatternsPS00352  COLD_SHOCK; 'Cold-shock' domain signature.     

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