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Gene detail [Fasta]

Species Dendroctonus ponderosae
GeneDPO005315
PositionSeq_1101782:3850..13078[GBrowse]
sequence mRNA:
>DPO005315-RA
ATGAGCAGTGATGAAAACGAAATCAGTAATCGGAATCCAAAGAGGAAAGTTTGTCCTTTGCCGGACAGCTCACATAGTTC
TTCAGAAGTCTCAGATGGGAGTCCCATTATTGGCAGCTCATCGTCGAGAAAAAAAGCTGGGGTAGGGATACCAGAGAACT
GTGAACACACTTTTTGTTTGGAATGTCTTCAAGAATGGTCAAAAAATATGAACACTTGCCCCGTTGACAGAAAAGAATAT
CACTCAATCACTGTTAACAAGTTTTTAAATGGTAAATTCCTAAGAAAGATTCCAATTGAGAAACCTGTACTTCAAGATGA
ATCTGTCAACATTATTGAAGATCCAACATTTTGCGAAATTTGTGGATCAAGTGGTGACGAAGACCGAATGCTTCTTTGTG
ACGGATGCGATCTCGGATTCCATCTGTATTGTCTAGAGCCTCCACTCGCTGAAGTTCCTGAAGGTTCATGGTATTGTAGT
CAATGCAGATCCTTGGAAAGAGTACATATGAATTTGAATGAAGTTGGCATTTGGCTTAATGAGGAAGGATCGAATTACGT
TGGTAGTTCTTCAGCACAAGGGCAACCAGCACCATTTAGAACATTGACTGAAGCGGAAATATTGCAAGAAGAAGAAAAAG
AAAAGCAAACTACTGGAAACAGTACTCCAGTAAGTGACAATGATGTTGACATATATGGAGATATGGAAAGTGAAACCGTG
ACTACAACCAGAGACGACGAATTTAGACCTCCGACATCTCCAGTAACTCAAAGTCAAGTTTCCAACGCTAACACCGATGA
AGATAATGACTCTGAATCAGGAATGGTCATTGACACTGAAAAGGGTTTTGATGATTCGGTTACATCTACTGTAGGTATTG
TGCATGCACTGGCTTATAGTCCTGGTCAACCGACGTCTAGTCCAACTCGGTCAATCTATAGTCCAGGTCCAAGTTACAAT
CCGGGACAACCAACCTATAGTCCAGCTCCACCGCTTCATGTTCCGGATCTACCGACTTATAGTCCGGGTAACCCTACAGG
TAGTCCAGAGGAAGCAACCACACAGGACTCACTGGATTCCCAAAATATCAGTTTAGGATATGAACAACTTCAGAGAGATC
TTGCTTCAGGTTACGATGATCTTCAAAGGGAAATTGCTTCAGGTTATGATCAGCTTCAGAAAGAATTTGCACTAGGCATT
AAACAATATCAGCCTTCGCTGACTTGGAATAAAAGCTCAGGCGAAACTAGTTCTACGTCTGTTCCCCCTGCGCCAAGCCA
AGCGGTCCTTAGCAAGACCCAAATAAGCGCTTCCTCTATTGGAGGGCCACCGGAAACTGCAATAACTATCGGAAAATCGG
GTGATACAAATGGTCCGCATTTACAAGAATTTTCAAGTCTAAATAATATACCAATTCCGCCTGCTGACGATATCAATAAG
GTAAATAGTTCAACGGCTGAAAGAACTTCTGGTGATACTTCCATTAATAATCTAGAGAAGAGGAATTATGATGATGATGA
TTCGGATGATGGATGCCCAAACTTTAGTATTTATTCTAGACAAAGTAAATCCGTGGCATTAACCACAGATATATCCATGC
CATCTTCTAGTGAAATTCAAACTGGAAATATAAATTATATTTCGGATGCGGTTGATCCAATAACAGATGAATCAACATCA
TTGCCAGACTCGCCTCAAAGAGTTACAGTCGAAAAAACTGGTTCAGATCCGCGACTTCAAAAAGTTTCGTCGGAATCGTG
GAATCTTGGCGGCTTGTATAGCGATTCCGAAGATGAAACCATAGTGAAAAAGAAGAACTCCTTTGCTATAGAGGACATAA
AAGATATGACAGAAGACATTTTAAGTGAAGAGGATCGAAGTTATACCCCTGTATTAGACGAACGAGTCGATAAATCTAGA
GAAGGTCTTGAAGGCCTTGATACAGAAATGATATCTGATGATGATCGGAACGATTTTGACGAATCCCATGAATTAAAAAC
AATTTCCGATGGAGATGCTTTGGAGATTAATGCCAAAGAGTTGGAACTAGAATTTACCAGACCTGAAGACTTCGAGGAAG
GCGAAATTGTAGACAAAAACAAGGAGAAAGCCGTCGAACATAGTAAGGAGACGCCTGAGCGGAAACCTAAAAAAGACAAA
GCCGAAAATGAGAAAAAGAGTGAGAAAGACGTAAAGAAGAAGAAAAAGGAGAAAGTCAAAGAAAAAGAAAGCACATCTAC
AGAAGCGAATGCCAACAAAGAAAATGTTCACAAAGAAACGTTCAAGAAACTGACCAAAAGCACCAAGGAAAGAAATTATA
GAGATAGAGATAAAGACAGGTCCAAGGAGTCTTTGCGGGCTCGTTCCCGCACAAGAACTCCCGATCTTACCGAACGGGAA
AAGGAAACAAGAAAAAAGAAGGAGAAACGCAAGGAACTTGAGCGATACAATGTTCGAGCTATAATCGCTGAAAAACCGAG
ACCTCATCCCAAAGATGAATTCGGTCGAGATTTGCGCCAAGTTTCATCACGATCGAGAAGCCGATCGTATACACCTCCTT
TAAAGCATAAGTCACCGTTGAGAACCAGACAGACTCCATCTCCAATTCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAAGTCGAAGGTCACTGTCGAAACGACGATCGCTTTCTAAAGCAAAAGA
TAAAGCTGTAAAGAGGAAGGCTCGATCTAGAAGTAGGTCACGCGATAGGCAAAGAAACAGCTCTAAAGCAAAAAAACGGA
AGGTTTCTATCAGCAAAAACAACCGACAAAAGAAATCTAAAGACAAGAATGAGAAGCGGCAGCGGCGCAGTCACAGTCGA
AGGCGAGTACATTCAGGGCAGTCTCGGTCTGTTAGTCCAAGGCGAGAACACAGGGAATGGACACCATCTTTATCTAGATC
TCTTACTCCACCTGTACGTGTGGTTTCTCCATCATGGACACCACCTAAAACTGATAGTTCCAACGCATTGCGTAATCAGA
ATCTTACGGTAATTGTAAACAATGATACTGCTAAAAAGAAGAAGGAAAAGCGAGGTAGAGAGCGGAGGAGAAAAGATGAC
TCTCCAACCAAAAGGAGACGTAGGGAAAGGGAGCGAACGCCTCCCCCGTCTAAAGAAGTATTTGCATCAGGCGATAACAT
TTTAGTAAGTGTTAGTTTTAATAATGAAAATGAAACTAGAGATATAAGTACTCGTGAAAATAGAAAAAGGAAAGACGCAT
CGTCAGAACGGCCAAAGAAAACTAAGGAAAAGAAAAATAAAAATAAGAAGGATCTGACAGGAGTAAAACCTGTAGCAATT
ATCGATTTAGAGAGATCTCCCTTTCAAGAAATTGTCTCCTCCCCTAAAGATGTAATAGTTCTTAGTGATAGTGATAATAA
TGAAAATGACGTCCGAGATATTCAAAATAATATTTGCGATTCATCTCAACAAGTTGCTAGCCCTGAAGAGACTCTTAATT
ATACGATGGGTCCAAAAACACCACCCGAACCGGGCGTTAAATTCGCTTTGCTTCCGAAAGCTCCACAACTGCGTGCAATA
AACAATCCTCTTCATGATCCTTTGGAGACCATTGAAGAGGAGGCTCAGGACGACCTCAATAATAGTTCACATAAAGGACC
AAATACTCCTCCTGAAGAACCTCCTACTTCGCCGCCCAGTTCTCCAGATGCTTATGATCCTTTTGAGCCAACAAAAAGTA
GGTCGCCTACTCCTGAACCTTGTAATGTTCAATGTGAAATCCACGAAGAGGAAAAGCTTCAAGGCCCCCTGGAAAATTTA
GATCTGGAAAAGTCTGAGAAAACTCCTGATGCAATTAAGTCGCTAACACCGCCTATGCCGGATGTTCAGCCTGCAGATTC
ACAAAGTGGCAATAAAGACATTACTGAGGGTAAGTCGCCAGTTGATCGGATCGGGGTGTCTTTGAATCAGCTGATTCAAC
CATCAATTCCCAAGCCAATAGCGCAAACTGTTCCATTCAGTTCAATACAAACATCAATCATATCCCCAGCCCCTGTATCC
AGCACTATTACTATTTCAAGAATAGGCATGTTAAGTTCTGCAGTAACGCCAGCTGCCACTATCCCACAAAGAATCGTACT
GCCAAACCAAATTAAATCAAGTCCAGTAAAAATACTTCCGACCAAAGCTGCAGTTAAATCCACTCCGATTAAACCTATGC
AGTTAAAAGGTTCGAACAACAAGAAGGGCTCCAAACAGCAAAACGGCAATACTGCGGATGATGCCAATCCGGATATGGAT
TCTCCATATTCACCTGGATCCAGTGACTATGAGGATCTCTTTGAGCCGCCCTCTGAGCCCGTTAGTGCGACTTCGAAAGT
CAAACCGTCTGCCAAGCCGAAGCGATCAATCAAAAAAGCTCAAAATACGTTTGACAACTTGTTTGGTTCTCCAAGTTATA
GCAAAAAGACGAGCAAGAAGGTTGCAAGCAAGAAGCCAGTTCCTGCCAAGCCGTTGAGCAAACATGTCGGTATTAAAGTG
GATGAAGACAGTTTAAAAATATTGGAGGACTTACCCAACTCTGCAGTGGAAATGCAAGTGAAAGATAAGGTTAGTATGGG
ATTAAAAGAGATATACAGGGTGGCCATTTTCTGA
PEP:
>DPO005315-PA
MSSDENEISNRNPKRKVCPLPDSSHSSSEVSDGSPIIGSSSSRKKAGVGIPENCEHTFCLECLQEWSKNMNTCPVDRKEY
HSITVNKFLNGKFLRKIPIEKPVLQDESVNIIEDPTFCEICGSSGDEDRMLLCDGCDLGFHLYCLEPPLAEVPEGSWYCS
QCRSLERVHMNLNEVGIWLNEEGSNYVGSSSAQGQPAPFRTLTEAEILQEEEKEKQTTGNSTPVSDNDVDIYGDMESETV
TTTRDDEFRPPTSPVTQSQVSNANTDEDNDSESGMVIDTEKGFDDSVTSTVGIVHALAYSPGQPTSSPTRSIYSPGPSYN
PGQPTYSPAPPLHVPDLPTYSPGNPTGSPEEATTQDSLDSQNISLGYEQLQRDLASGYDDLQREIASGYDQLQKEFALGI
KQYQPSLTWNKSSGETSSTSVPPAPSQAVLSKTQISASSIGGPPETAITIGKSGDTNGPHLQEFSSLNNIPIPPADDINK
VNSSTAERTSGDTSINNLEKRNYDDDDSDDGCPNFSIYSRQSKSVALTTDISMPSSSEIQTGNINYISDAVDPITDESTS
LPDSPQRVTVEKTGSDPRLQKVSSESWNLGGLYSDSEDETIVKKKNSFAIEDIKDMTEDILSEEDRSYTPVLDERVDKSR
EGLEGLDTEMISDDDRNDFDESHELKTISDGDALEINAKELELEFTRPEDFEEGEIVDKNKEKAVEHSKETPERKPKKDK
AENEKKSEKDVKKKKKEKVKEKESTSTEANANKENVHKETFKKLTKSTKERNYRDRDKDRSKESLRARSRTRTPDLTERE
KETRKKKEKRKELERYNVRAIIAEKPRPHPKDEFGRDLRQVSSRSRSRSYTPPLKHKSPLRTRQTPSPIRAXXXXXXXXX
XXXXXXXXXXKSRRSLSKRRSLSKAKDKAVKRKARSRSRSRDRQRNSSKAKKRKVSISKNNRQKKSKDKNEKRQRRSHSR
RRVHSGQSRSVSPRREHREWTPSLSRSLTPPVRVVSPSWTPPKTDSSNALRNQNLTVIVNNDTAKKKKEKRGRERRRKDD
SPTKRRRRERERTPPPSKEVFASGDNILVSVSFNNENETRDISTRENRKRKDASSERPKKTKEKKNKNKKDLTGVKPVAI
IDLERSPFQEIVSSPKDVIVLSDSDNNENDVRDIQNNICDSSQQVASPEETLNYTMGPKTPPEPGVKFALLPKAPQLRAI
NNPLHDPLETIEEEAQDDLNNSSHKGPNTPPEEPPTSPPSSPDAYDPFEPTKSRSPTPEPCNVQCEIHEEEKLQGPLENL
DLEKSEKTPDAIKSLTPPMPDVQPADSQSGNKDITEGKSPVDRIGVSLNQLIQPSIPKPIAQTVPFSSIQTSIISPAPVS
STITISRIGMLSSAVTPAATIPQRIVLPNQIKSSPVKILPTKAAVKSTPIKPMQLKGSNNKKGSKQQNGNTADDANPDMD
SPYSPGSSDYEDLFEPPSEPVSATSKVKPSAKPKRSIKKAQNTFDNLFGSPSYSKKTSKKVASKKPVPAKPLSKHVGIKV
DEDSLKILEDLPNSAVEMQVKDKVSMGLKEIYRVAIF
Swiss-ProtPHD and RING finger domain-containing protein 1
KEGG     K17586     
SUPERFAMILYSSF57850  RING/U-box superfamily     
Gene3DG3DSA:3.30.40.10     
PfamPF00628  PHD; PHD-finger     
SMARTSM00249     
ProSiteProfilesPS50089  ZF_RING_2; Zinc finger RING-type profile.     
CoilsCoil
ProSitePatternsPS00518  ZF_RING_1; Zinc finger RING-type signature.     

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