Data -> Dendroctonus ponderosae
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| Resource | [Genomic] [GFF3] [mRNA] [Protein] |
|---|---|
| Data source | Ensembl |
| Publication | Keeling, C. I. et al. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest. Genome biology 14, R27, doi:10.1186/gb-2013-14-3-r27 (2013). [PDF] |
| Organism strain | |
| Assembly | Ensembl release22 |
| Genomic Size | 246 Mb |
| GC content | 35.9% |
| Number of scaffolds | 8,188 |
| Scaffold N50 | 628,733 |
| Number of contigs | 40,744 |
| Contig N50 | 10,101 |
| Gene Set | Ensembl release22 |
| Gene | 13,456 |
| Protein | 13,459 |
| BioSample | SAMN01121786 |
| Submitter | BC Cancer Agency, Canada's Michael Smith Genome Sciences Centre |
| Assembly level | Scaffold |
| GenBank assembly accession | GCA_000346045.2 |
| RefSeq assembly accession | n/a |
| WGS Project | APGL01 |
| Assembly method | ABySS v. 1.3.0 |
| Sequencing technology | Illumina HiSeq |
| Tissue | antenna |
|---|---|
| Year | 2012 |
| Platform | Roche 454 |
| Layout | SINGLE |
| Raw reads | 1,125,738 |
| Data accession | SRP011990 |
| Assemble software | Newbler |
| Contigs | 14,357 |
| Annotated | 10,311 |
| Reference | Keeling C I, Henderson H, Li M, et al. Transcriptome and full-length cDNA resources for the mountain pine beetle,< i> Dendroctonus ponderosae Hopkins, a major insect pest of pine forests[J]. Insect biochemistry and molecular biology, 2012, 42(8): 525- |
| Download | [Fasta] |
| Tissue | midgut and fat body tissues from juvenile hormone-treated adult |
|---|---|
| Year | 2012 |
| Platform | Roche 454 |
| Layout | SINGLE |
| Raw reads | 964,388 |
| Data accession | SRP011990 |
| Assemble software | Newbler |
| Contigs | 11,002 |
| Annotated | 7,944 |
| Reference | Keeling C I, Henderson H, Li M, et al. Transcriptome and full-length cDNA resources for the mountain pine beetle,< i> Dendroctonus ponderosae Hopkins, a major insect pest of pine forests[J]. Insect biochemistry and molecular biology, 2012, 42(8): 525- |
| Download | [Fasta] |
| Tissue | adults; pupae; larvae; antennae; midguts; fat bodies; head |
|---|---|
| Year | |
| Platform | |
| Layout | |
| Raw reads | |
| Data accession | SRR449538 SRR449539 SRR449540 SRR449542 SRR449543 SRR449544 SRR449545 SRR449546 SRR449547 |
| Assemble software | Newbler 2.5 |
| Contigs | 20,540 |
| Annotated | |
| Reference | |
| Download | [Fasta] |
