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Gene detail [Fasta]

Species Dendroctonus ponderosae
GeneDPO001955
PositionSeq_1101831:818248..828723[GBrowse]
sequence mRNA:
>DPO001955-RA
ATGACTGTTGCAACCAGAGGGCAGGAAATTGTTGAAGACAACAAGGAAGTCCAGAACGCAATTGCTGGCCCTTCAAATGT
AACTCCAGAAGTGGTCCAAGACGAAAATGCTGAACCAGATTTCCCAAAAGATAAACTAGTTACTTTAGAAGATAAAATCT
CGAACCTAAGATGGGTAGTGCCAGTTTTGCCAGATCAAGAACTGGAAGTTCTGCTGAAGGCCTCAATAGATCTGGCAAAG
AAGAACTTGGACATGAAATCAGAAGCGTGCCAGCGCTTCTTTCGTGATGGGTTGACAATTTCCTTTACCAAAATACTAAC
AGACGAGGCAGTGTCCAGCTGGAAAACCAACATCCATGTTTGCATTTATCAGAATTGTTTAAAACTAATTGAACTGTGTG
TCGTCAAGTTGCCCCATGACTACTATCCATTGCTCGATCTTCTGGCTATGGTTCTCAACCCTAATAACAAGTTTCATAGT
TTCAATTCTACCAGACAGAGTGAAACTGCTGGGCCTGGATGTATTTTAACCGAGGAGGAACTATTTGCAAGACCTTCGTC
AGATCCTCGCAACCCAAGGGGCTGGCTGGTCGATCTAATTAACAAATTCGGAGAGCTTGGAGGATTTCAGAATTTGCTCG
AGCGATTTCAAACAGGAAAAAATCTGAGTGTCTCTATTGTATATGCCCTCTTAACCCCTTTTGGACTTTGTTATGAATTT
TTAACACCTCATACTATTCACAAGTATGCCCTTCCAGTATTGGAAATGGTACCAGGTATCCTGGAAAAACTAACCGATGA
GGAGCTTAAGCGAGAAGCGAAAAATGAACAGAAAAGCGACATAGTCTCCTTAATTATTCGATCAGCGAAAAATGTAGCAT
CTCGAGTACCTGACCAAGAGGAGTTGATTAGAACATTGGAAGGATTCAGGCTGACAATGATATTAAGACAATTGCAAATA
TCCAGTTTTAATGGCAAAATGAACGCCCTTAATGAGATTAACAAAGTTATATCTAGTGTAAATTATTACATAAATCGACA
TCATGGAATAGAGGAAGAAGAATATCTAACACCAGAAAGGATGGCGAAATGGATTATCGATAACAAAGTTCTGGAAATTG
TATTGCGCGATTCCCTTCACCAGCCTCAATATGTGGAAAAATTGGAGAAAATATTGAGATTCGTTATTAAGGAGAAGGCT
CTAAGCCTTGGCGATCTCGATGCTGTTTGGGCTGCGCAAGTTGGCAAACACGAGGCCATTGTGAAAAATGTGCACGATCT
TCTGGCTAAATTAGCATGGGACTTCAGTGCTGAACAATTGGACCATCTGTTTGAGTGTTTTCAAAACAGCTGGACTTCAG
CTTCGAAAAGGCAACGCGAAAGACTTCTTGAGTTAATCAGAAGACTTGCTGAAGATGATAAAGATGGTCTGATGGCACAC
AAAGTACTGACTCTCTTTTGGAATCTCGCCCACGCAGAGGATGTTACAACTGAAATTATGGACCAAGCATTGGCGGCCCA
TGTGAAAATTCTCGACTATAGTTGCTCACAAGAGAGAGATGCTCAAAAAACCGTATGGTTGGACAAGTGTGTAGACGAAC
TTAAAACTAGCGACACTTGGGTGTTACCAGCGTTGAAGCAGATTCGCGAAATTTGTACGCTTTATGAGCAGAATCCGAAT
GGAGGACATCCGCAGCGTACGCATCACATTTATTACCGCCAAGAGGTAATAGAACGTCTCCAAAATCAACACTCTCTAGT
CATTTTGGTGGCGAATAGTCTTACAACTTACATGGCTCACTTAAGACCGTTGGTCACTGAAAGGCCGGATTTAACCGATG
AAACCTATGTGCCTGATGGGAGGTATTGTCATGCGCTTCAAGTGCAAGAACGGCTCAATTTTCTAAGATTCCTCTTGAAG
GATGGGCAATTGTGGCTATGTGCTGATCAAGCAAGGCAAATCTGGCAATGCTTAGCCGAGAACGCGGTCTTTCCGTCCGA
TCGCGAAGCATGCTTTCGCTGGTTTTCCAAACTTATGGGCGAGGAACCTGATTTGGATCCTGGCATAAATAAGGACTTTT
TCGAAAATAATATCATGCAAATAGATCCGTTATTGTTGACCGAAAGCGGCATACGCTGTTTTGAAAGATTTTTCAAGGCT
GTGGTGACTCTTTGTCCAGATGAAATAGCGGCCAGAGCGATTGAATTCCTCAGAGAAGTTAGCACTAATTTGGGGCCAAA
ATTATTACAGAATCAAGTAGATTTTCACTTGCAATATATCGGCGAGTGTTACGACAGACTTAGGGCGCACTATGACACCG
TCACTATTCTGCAAAAGTCGCCGACAGATAAAGAGCTTGACAACAATCAAATACCAAATAGGATACAAGCTGAGGCTGTG
AAAATGTGCAGAGTAATGAAGGTTTTGCACGAATACATAAGCGAATGTGATAACGCGTTTGTGGGAGAAAGAAGAATATT
GCCTTTGCACAGAGCGTGCTACGGAAAATATTTAACGGTTATAGTTCGGTTCTCGAGTTTAAATCGACAAGTTGATGATA
TGGATCTTCATACTCACTCGAACGACACGCTGTCATCTCTGAGGAAGACAATTCTGAGGCTTATAAAGCCAGGCCTGCAT
TGTAAGCTGGAACTGTATTTAAATGGTGAACTTCTTGAGCCAACTGACGATCGAAAGCTACTTTCTCAGATACCTATTCG
CGACAAAACCATAATATCCGCAAAAGTCATTCAGCTAAATTCAAATATGGCTTCGTCTCAAGATAGTAGTTCAGATAGTT
CAACTTCATCACCACATCACTTGTATGATGGCCCGAACATTGATGTCGAGAGTCTTTTGCCAGGTGTTTTAATGTCTCAA
AATCCCATATACGCCGAATTTTTCTGTAACTTAATGGCCTTGGGCAGTCAGTTGGAATCGCCTGCTTTAAGAAACAGCGC
TCATGCCTTGCTGAGAACTATACCTTGCGATAGCCGAACCATGGAGATTCTAAAGCTTCTTTTTACTGGGCCTTCGGAGC
CAAATATGTCAATGGAAAACACTTTCTTTCGTGCGTCATCTTCAGAGGTTTTATATCACTTGGAGGTTTTGTATGCGATG
TTGATGCCCGCGATGGACACACTCTCCGACAAGACATTTGAATTTCAATACACTTTCATAACATCTGGAGAAGCTCATTT
ATTTTTAGAAATGTTTACGAAGAACAACTTTATGTGTAATGCAGACAATTTTACTAGACGATCCGCTTATTTAGTGATTA
TGAAGATTTGCAAGCTAATTTTAACATCATTGGCTCATGTTCTGGTAACACTAAGCGAAGATCATACACCGCCAGAAAAT
GAACCATACAACGAGACCATCCTTACGCCGGGAATGCATTTGAGTCAAGCATTGAGATCTGTGCCCGGTCATTCAGATTA
TTTGCTACGTCAGGTAGCTATGAAACTATCTCAAGGCTTAGCCCAACTGATGGTGTCCGAGACTGGGAGTTCTGGACAAG
CCCAAGCATTATTCAGCCAGGCACTGAATTGGGAATTACCAGACTTGCCCACTATGCTCGCACTGGTTCGACTCATCTGG
GCCGCAAGCAGTAATCATTTAGGCGAGCTAAACTCGTCTCCAGAAACTTTACACTCTTTGTCAGAGCCTGCAAAGCTAAA
TTCTCACGGGGAATTGGAGGGTGAAGATATCCTATTGTGTAAAGAAGCTATGGAATTGCTTAGCACAGCAGTGGTGTTAA
ATTCTGGCAGTCTGGAACATTTGTATCAAGATAGCTGGTGGCCATACTACATTACGGATCTTGTTCTAATCAATCCGAAC
TGTGCAATTCGTTTTGCAGCCGCTGAACAGCTAATAGTGATTTGCACTTGTGGCGCTGCGAGTCGATTGGCCCTTCAGCA
TATAATGCCCCTTTTGTTCTCTTTGCTAGACACAATGGTTTTAGAATATGCCGATAATGCTCATGAATATTTCCAGCTTT
TGTGCCGATTAGTCAGTGTTGCTTATATAACCAGTTGTCCTCTAGATAATGCCGTCAATTTACTGGCTAATGAGGTCACC
TGGCTTAGAAAAGCACGCGATAAGAATGAAGTGCTTATCGAAGGACATTTGGGCTTGGCAAGAGAACTGCTGAACTTTAT
GACTCCTGCTCAGAAATGCGAGCTGGGCAGTGCTGAGTCTGGAAGTCTAATTCGCGAGCTACTCGAAGATTTCCTGTTTC
CCGCCAGCAAATTGCAGCTGCAGCTGGCAAAAACCAAGCAACTGGGGGAAGATCCGGCTATTCCGGTATGTGATACACCT
CAAACCCAGGCGGCCGCCTTCGATTTGCTCATTTCCTTGTGCTACAATTGCGTTCCTAATTACAAGCAATTGGTTGCTAT
GTTGACGGAAATGTTCTATTCTGATTCCGCTATACCAGACTGGGATCATTTACCGGCTGTGGGCCCCCGACCGTTTCGGG
GTTTTGTCGGATTGAAAAACGCAGGTGCCACTTGCTACATGAATTCTGTACTTCAACAGTTATACATGGTAGAAAACATC
AAACAAGGACTATTAGCGGCTGAAGGTGCTGCGACTGATCCAAACGAGGATTTTACTGGCGAGGAACGATTTGAGTTGGA
CATAGATTGCCCAGACGACAGGAACTGCGTAGACGACAACAGAAAGGATTATAATGTTGGAATATTAAAACAAGTGCAGG
CAATTTTTGGGCATTTAGCATGTTCTCGTCTCCAATATTATATTCCTCGCGGACTTTGGAGACACTTTAAGCTTCAAGGA
GAACCAGTCAATTTAAGGGAACAGCAGGATGCTGTCGAATTCTTTATGTCTCTAGTCGAAAGTTTGGATGAGGCCTTGAA
AACGCTAGGACATGAGCAGATCATGTCGAAAATCTTAGGAGGCTCCTATTCGGACCAGAAAATTTGCAAAGGCTGTCCAC
ATCGTTATTCCAAAGAAGAACCTTTTAGTGTTATAAGTGTAGATATAAGAAATCATAGCAGTTTGCCGGATTCGATGGAA
CAGTATGTCAAAGGGGAGCTGTTAGAAGGAGCGGATGCTTATCATTGTGAAAAATGCGCGAAAAAGGTCGTTACCGTCAA
GCGTCTGTGCGTTAAGAAACTGCCACCAATTCTAGCGATTCAGTTAAAGCGATTTGAATACGATTTTGAACGAGTATGTG
CCATTAAATTTAACGATTACTTCGAGTTTCCCAGGGAACTGGACATGGAGCCTTATACTGTTTCTGGCTTAGCCAAAATC
GAAGGAGAGATTATAGACTGTGATTTAGATCCTAGCAATAGTGACGTTTGTACCAAGTATCGTTTATCTGGCATTGTTGT
ACATTCTGGCCAAGCATCAGGGGGACATTATTACTCTTACATTAGGCATCGTGATCCATCGGGTGAAGTAAGGTGGTACA
AATTCGATGACGGAGACGTTTCTGAATGTAGAATGGGAGAAGATGAGGAAATGAAAGGTCAATGCTTTGGAGGTGAATAT
ATGGGCGAAATGTTTGATCCAATGTTAAAAAGAACCACATATCGAAGACAAAAACGATGGTGGAATGCTTATATGCTATT
TTACACTCGGCACGATGTTGAGGAAGAATCGATGATGAAATCTCTCAGTCAAGTTACACTGTCTTTATCAAAACGAGAAA
CCCATCTAAAAATGCCCATAGCGATAGAAAATAGTATACGGAAGCAAAACATTAAGTTTTTGCATCATCGAAGTCAGTTC
ACGTTGGAATACTTCGCCTTTATCAGAAAGTTAGCCACTAGTTGCGCTCAAACGAATCTCAGACATAACCAGAGCATTTC
GAATGATCTTTTAGAGCAACAATATCTGCTGAGTGTTCAGCTGGACCCTCCATGTCCTTGTCCGCCTGGAATCAATAATC
CGGATCCTAATGCAACCTTAAGTGATCACTTAATATGGGCGTTATTGGGGCTGTTGCAGCGCGAAGTAAGCGAACATGGG
CGACACTTCCCCCATTACTGCACAGTATTTCATACGTATGCCAGTCAGGGCATTCAAGAAAAAGCACAGCTCTTGCGACT
TAACGTGCCTTCTACCTTTATGTTAGTTGCCCTAGACGAAGGGCCCGGACCGGCCATCAAATACCAATACACTGAGTTAA
CTAAACTTACTCAAGTTGTATCGTGTCTAATCCGTTGCTGTGATGTTAGTTCGAAATGCCAGTCGAGTTCAGCTCCAAGC
CCAATTTTGCCTAATCCCTTTAGGGACACGTCAATACCTGACTACATAATGCCCATCTCTCCGCAAGATGCAGACCTCCT
CTTCAAAGATCCCAGGTTTATCAAAAAAGTTATCGAAGACCAAAATCTCACAGATGAGGCAATCAAGCTTATACAGTTCT
GTTCATGGGAAAACCCAGAATTTTCCAAGAGTGTTCTCTCCGAGTTGTTGTGGCAAATTGCGTTTGCTTATTGCCAAGAG
CTGAGGCACCATAACGAAATACTGATGTCAGTGTTGCTGATTGAAGATTCCTGGCAATTGCAGAGAATCATCACCGCCAT
AACGGGAATACCAGATGAAAGAGAGGGGATTCTAGAAACGATTGTCAGAGCAAAGAGTCACTATCAGAAACGAGCATATC
AATGCATCAAGTGCTTGGTTGCCTTATTCACTAAATGCCATTTGGCTCAAAATGTGTTACTAAGTCACGTTGACATCAGA
CGATCGTGGATTTCGGCGATAACATGGCTTCAAGACGAACTAGACCGAAAATATCCACAAAACTCTCAGTACGCCTACAA
TACGTGGTCGCCTCCGACCGCTAGCAATGAAAACTCGAACGGTTATAATCTAGAAAGATCGAATACTGCAAAGAAAACGC
TTGAACGAGCACTAGAGCTAATACCAAACGTCGAACAGGTCGAAGACGAAGGAGCTGAAGATCCTGAATCGCAAGAAGAT
ACCGGTCACGTCAGTGATGAACAAACCAACAATGTCGAGAGCTCTGACTTGGGCTAG
PEP:
>DPO001955-PA
MTVATRGQEIVEDNKEVQNAIAGPSNVTPEVVQDENAEPDFPKDKLVTLEDKISNLRWVVPVLPDQELEVLLKASIDLAK
KNLDMKSEACQRFFRDGLTISFTKILTDEAVSSWKTNIHVCIYQNCLKLIELCVVKLPHDYYPLLDLLAMVLNPNNKFHS
FNSTRQSETAGPGCILTEEELFARPSSDPRNPRGWLVDLINKFGELGGFQNLLERFQTGKNLSVSIVYALLTPFGLCYEF
LTPHTIHKYALPVLEMVPGILEKLTDEELKREAKNEQKSDIVSLIIRSAKNVASRVPDQEELIRTLEGFRLTMILRQLQI
SSFNGKMNALNEINKVISSVNYYINRHHGIEEEEYLTPERMAKWIIDNKVLEIVLRDSLHQPQYVEKLEKILRFVIKEKA
LSLGDLDAVWAAQVGKHEAIVKNVHDLLAKLAWDFSAEQLDHLFECFQNSWTSASKRQRERLLELIRRLAEDDKDGLMAH
KVLTLFWNLAHAEDVTTEIMDQALAAHVKILDYSCSQERDAQKTVWLDKCVDELKTSDTWVLPALKQIREICTLYEQNPN
GGHPQRTHHIYYRQEVIERLQNQHSLVILVANSLTTYMAHLRPLVTERPDLTDETYVPDGRYCHALQVQERLNFLRFLLK
DGQLWLCADQARQIWQCLAENAVFPSDREACFRWFSKLMGEEPDLDPGINKDFFENNIMQIDPLLLTESGIRCFERFFKA
VVTLCPDEIAARAIEFLREVSTNLGPKLLQNQVDFHLQYIGECYDRLRAHYDTVTILQKSPTDKELDNNQIPNRIQAEAV
KMCRVMKVLHEYISECDNAFVGERRILPLHRACYGKYLTVIVRFSSLNRQVDDMDLHTHSNDTLSSLRKTILRLIKPGLH
CKLELYLNGELLEPTDDRKLLSQIPIRDKTIISAKVIQLNSNMASSQDSSSDSSTSSPHHLYDGPNIDVESLLPGVLMSQ
NPIYAEFFCNLMALGSQLESPALRNSAHALLRTIPCDSRTMEILKLLFTGPSEPNMSMENTFFRASSSEVLYHLEVLYAM
LMPAMDTLSDKTFEFQYTFITSGEAHLFLEMFTKNNFMCNADNFTRRSAYLVIMKICKLILTSLAHVLVTLSEDHTPPEN
EPYNETILTPGMHLSQALRSVPGHSDYLLRQVAMKLSQGLAQLMVSETGSSGQAQALFSQALNWELPDLPTMLALVRLIW
AASSNHLGELNSSPETLHSLSEPAKLNSHGELEGEDILLCKEAMELLSTAVVLNSGSLEHLYQDSWWPYYITDLVLINPN
CAIRFAAAEQLIVICTCGAASRLALQHIMPLLFSLLDTMVLEYADNAHEYFQLLCRLVSVAYITSCPLDNAVNLLANEVT
WLRKARDKNEVLIEGHLGLARELLNFMTPAQKCELGSAESGSLIRELLEDFLFPASKLQLQLAKTKQLGEDPAIPVCDTP
QTQAAAFDLLISLCYNCVPNYKQLVAMLTEMFYSDSAIPDWDHLPAVGPRPFRGFVGLKNAGATCYMNSVLQQLYMVENI
KQGLLAAEGAATDPNEDFTGEERFELDIDCPDDRNCVDDNRKDYNVGILKQVQAIFGHLACSRLQYYIPRGLWRHFKLQG
EPVNLREQQDAVEFFMSLVESLDEALKTLGHEQIMSKILGGSYSDQKICKGCPHRYSKEEPFSVISVDIRNHSSLPDSME
QYVKGELLEGADAYHCEKCAKKVVTVKRLCVKKLPPILAIQLKRFEYDFERVCAIKFNDYFEFPRELDMEPYTVSGLAKI
EGEIIDCDLDPSNSDVCTKYRLSGIVVHSGQASGGHYYSYIRHRDPSGEVRWYKFDDGDVSECRMGEDEEMKGQCFGGEY
MGEMFDPMLKRTTYRRQKRWWNAYMLFYTRHDVEEESMMKSLSQVTLSLSKRETHLKMPIAIENSIRKQNIKFLHHRSQF
TLEYFAFIRKLATSCAQTNLRHNQSISNDLLEQQYLLSVQLDPPCPCPPGINNPDPNATLSDHLIWALLGLLQREVSEHG
RHFPHYCTVFHTYASQGIQEKAQLLRLNVPSTFMLVALDEGPGPAIKYQYTELTKLTQVVSCLIRCCDVSSKCQSSSAPS
PILPNPFRDTSIPDYIMPISPQDADLLFKDPRFIKKVIEDQNLTDEAIKLIQFCSWENPEFSKSVLSELLWQIAFAYCQE
LRHHNEILMSVLLIEDSWQLQRIITAITGIPDEREGILETIVRAKSHYQKRAYQCIKCLVALFTKCHLAQNVLLSHVDIR
RSWISAITWLQDELDRKYPQNSQYAYNTWSPPTASNENSNGYNLERSNTAKKTLERALELIPNVEQVEDEGAEDPESQED
TGHVSDEQTNNVESSDLG
Swiss-ProtProbable ubiquitin carboxyl-terminal hydrolase FAF-X
KEGG     K11840     
SUPERFAMILYSSF54001  Cysteine proteinases superfamily     
PfamPF00443  UCH; Ubiquitin carboxyl-terminal hydrolase     
ProSiteProfilesPS50235  USP_3; Ubiquitin specific protease (USP) domain profile.     
ProSitePatternsPS00972  USP_1; Ubiquitin specific protease (USP) domain signature 1.     

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