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Gene detail [Fasta]

Species Linepithema humile
GeneLH22102
Positionscf7180001005018:1529205..1535501[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH22102
sequence mRNA:
>LH22102-RA
ATGGTACAGCGAGCCGCATGCAGCAGCGAGACGAGCGCATCCCTCAATGGCGTGCGGAACGGCGAGCGCGAAGGAGAAAC
GTCCGGCGTCGGCGTCGCGACGGATGCGGTGGTAGCGCGAGGTGCCGTTACGGACGGCGAGGTTACGGCTTCCCTCACGC
GCGGCAGCGGCGGCAGATTCTCCCTGTTCAGGTGGTTCAAGCGTAATCGCGACTCAACCGTGGAGAAAGAACGGCGAGCG
AGCGCGAGGCCGAACGATGACAGCGTCGTTCGACGTCGCAGCAGCGTCTACTCCAGCGCGGAAAGCGTAGACACCTTCTA
CAGCACGACGACGGTGCGCAGTTTCGCGTTTCACGCGGGAACTCTCGGCCGTTGCGACGTGCTGTCGCTGGACATCCTTA
ATCAGGCCGCCGAGGTCGGCCCGTTCGCCGCCGGAGCCTCGAAGGTGTCCGTGGGCAACAAAGAGAACGACGCGTCGGCG
GCGGTCGCCAGCACGCTACCGACGAACGTGCACTCCAGGAGGCGAGACATCACTGCCAGATACTCGCTGCACCCGTCGAC
GACCTTCGGCTCGTGCGGAAATTTTCCGACGCCCGGGTTATCGAGCGCATCGAGAAGACACGACGAGCGCGCGAGGACCG
GTTGCAATGGATCTGCGCGGCGGCGGGTTCACGTGAAGGGAAAACGTAAAGCGCCCAACCCTCCCGGCGCGGTGGTCAAG
GTCGCGGAGGTCGATGCACGCGAAACGTCCGCGAGGCACAGCGGCAGACGAAAACGGCGGGCGCCGCGACCGCCCCTGGA
AAATCGTTCCGCCGAAGAGCAGTCGGGACTGCTCATCACCAATGGCGGTAACATGGAGATAGAGGAGCGGAAGAATGCCG
ACGAGGGACAATCGATCAGTAACGACACACTAGTTCTTCAGGGTGGTATGCTGCTGTCGAAAAAGGAAGTTGGCAACAAG
GAACTTTTAAAGGCCGCGAAGAAGGACGACGCCGGAACGTCCAGCGTGACAGTTCATCAGGAAAGAGCGCACAGTCCCAT
CGGCGGAACTCTGAGCGCAGCCATGCCGCGACCTTGGTACAAGCGCAGCGTTTTCGAGCACTCCCGTGACTCCGGCTCGT
CGAAAAGAGGCGCTTTTCGCAGCCCTGCGACGTCCGTTGAAACGAAGGAAGAATGCATCGGCACGAACATGACTGCTACC
GCGAATTATTCCGTCGACGCTTCTCTGTCGAGATTAAATTTTTTCCATCGCGGAGAGCGACATAGCGACGACAGAAAGCG
ACAGGAGGCTAAACGAAAGTCCGGCCTGTCCATCCTGACGAACATCAGCGAGCTGGATAAGGAAGCGGCGGCGATCGTGC
AGGAAGAGCAGGCGAGAACGAGAGCGTCGATGTTGTTGAAATCGTCACAATTCGCCGACGCCTTCGAGAAGAGCGATGAC
GTCAACGAGGAGATTGTACAGGACATCGTTACCTCGGCGATGGAGAGCTCGTCGCCGCGACGGGGCACGCGTGCGCTGAT
CTCAAAATTCAATGCCATCAGCAACATCACCAAGGTCACGGTCAATGCCAACTTCTTTGCGCGAAGAGATCAGCCGGGTT
GCAGACTCGATCGAGACGCGGCGAGAAACAGCAGATTCGAGCAGATCGGAGATTGGAGAAACCAGAGGTTCTCGATGCAG
CAGGATCTCGGCCAAAACGTGCGCGTTGACAAAGACATCTCCAGATATTTTTTGCCACAGCAGAGACCATCGAGAAGTAA
AACTGAGGCAGCACACGCGGACGTGAAGCCGACAAACATAAAAATTGCGATCAAGGAGCAGAACGATCAGCTGATGCAAG
ACACGTCTAATAGAATATCTCTTTTGCAAAGCCAGCTCGCTGCAAATCGGGCGAACGAGAAGATTCAGAAGGACATCATA
TCGCCGGTAACTGAAGAGAAAATAAGATCGCGACAAGAAATCAGAAGAGAAAAGAAGGAGAAAGAATCGCCGAGATTAAA
CAGCGAAATTAGTAGAAAATTTTTGCTCTCCCGTGCTCGTAATTTAGCTGAAAGCACGGAAAACGCGTTAGGTCTTCTTC
GAGAGAAGACGGAGCGAGATGGCGAACGGCCGGAGGGAACGCAGAAGGAATTCTCCGACATCTTCGACGAGATCGACCGG
CAGCTGCGCTCAAGAGAGTTCAAGCTGATTGAGCGAAGACCAGCAGTCGAATCCGACAGAGCCAAAGTTCCGAAGGATGA
AGCTACGTCGAGTAAAGTGGCCAAAGTGCTCGATATCCTGGTGGAAGCCGAGAAGGATGGCAAGACAAGATCAGCGATAC
AATCTGCACGATCGATACCGGGCAAGGAAGCCTCGCGTTTGATTGACTCGGATCAGAAGGCGAAGTCTAGTAAGACAAAA
TCAACCGTCCTCAATACCGTCGAGGACCCAATTACCGCGGATTTGAAGGAGATGCTGAAGGAGATGAAGCACTCGTTACC
GAAGCGGCCGAAACCGAAGAAGGTTACGTCAAATGACGGCGACATTCTCGAAAAGGTTGAGAAACGCTCGCCCGTATCTG
CGAACAAGACGTACGTCGCGTCGGTCACGTCGACGAGGACGGATGCAACGTCATTGAACGATTACGAGGCGGATAAGCAA
AAGGTGTCCTCGTCCGTGCAAACCAGTGGAAACATTCGTAGATTGAATCAGCCTTCTACTTCCGCAGAACGACCATCTAC
ATCGGGTTGGAAACACGAGAACGTGCTCTACAGAACTTCTGGCAAGGGTTCGGCCCTCGTGAAGAATACTTTTCAACTGA
TACGACCGCGCGATTTCGCCGAGATAGAAGCGATGAAGACTACGAAGGAGGTTTACAAGGAAAACACTTATGCGAATGTG
ATAGAACCATCTCTGTACGCGAATGCTCACGTTCCTCCCGCCTCGCCAAAACAACAACCAGATCCGACACGATCTAAGGA
TATTTCGCAAAATAGTAATGTTAAAGTACCGTCCAATATTGTGATCGAGAATAAAATTACGCTAAACGAAGATGAGTTTT
CAGAGGAAGACGATAATTCAAGAGAGAGGAACATGAATACCCTGGCTATAAATCGATTGCTAAGAAAGCTGGAAGGGGCC
ATCGCATCAGGCCATCATCAGCAAGCTGCGGGATTAGCGAAGGAATTGGCAAGGCTCAAGATCCATTGTTCTGTGATACG
ACAGCGTTCGGCGGCGCGTTTGAAGGATCAGTCGATTAAAGTCAATATGTATATCGAAGACAAACTCGCGCACCAAGGGC
CTATACCGCTTCAGCTGCCGACGGGAATGACGGTGGCCGAACTCAAGACAAAGATACATACGGAATTCGAGATACCCACG
AACGTGCAGCGATGGATCGTCGGGAAAAACTTGGCCGATCGCGACGACGTTACGCTCAACGAATTACACGCAGTGGATGG
CTTACCGGTGTTTCTTTACCTCGTAGCTCCTGAATTGCATATCGACAATGCGACGCAAGCGAGCAAAGCGCAAGTCGCGG
AAGATGAAGTTCCTGAGGATTTGCCGCAAGATCCGCCAGCGGTAGTCTTGCAAACAATCGAAGAAAATCAGGAAATTATC
GAGAGAGAGGATGTAACGTTAGCAACAAACGAGGATCAGCGAGACACCGTGGAGATAGACATATCGGAAGATGTCAAGAT
GGGACGATACGAGGAATTGATATCGTTGGAGAACTGGGACGTCATTCCGAATTCCGAGCCGATCGAGTGCCCAATATGCT
TCGTTACATACGGGCCGCGCGAAGGTGTAATTCTCAGGGACTGTTTACACATGTTCTGCAGGCCATGCATTGCCAATACA
ATCGCGTACTGCGAGGAAGCCGAGGTGAAATGCCCATACAGAGACGCCGACTATACGTGTGAATCAACCCTTCAGGAACG
TGAGATCAAGGCGCTCGTCGAGCCGGAAGTTTATCAGCAACACCTCGCGAAGTCGATCGCGCAAGCGGAGAACAACGCTG
GAAACAAGGCTTTTCACTGCAAGACACCGGACTGCCCTGGTTGGTGTATTTACGACGATGACGTGAATAATTTCCTGTGC
CCCGTGTGTGGAGCTAATAATTGTCTTACCTGTCAGCATATAGATTTGATTTCAAAGGTTGTTCACACTGGGAAGAATTG
CAAGCAATATCAGCAGGAGTTGCAACTTTCGAAAGAAACTGATCAAGAATCTAGAAGAACAGCAGCAATGCTCAAGGAAA
TGGTTGACAGAGGTGAGGCACTTGCCTGTCCGACATGTGCCGTCGTTCTTATGAAAAAATGGGGTTGTGACTGGCTAGTT
TGCTCAATGTGTAAAACGGAAATATGTTGGGTTACCAGAGGGCCGCGTTGGGGTCCAGGAGCTTGTTGCAGGGTAAAGGT
GATACATCCGGTGGCTGTAAATGTGGTGAAAATGGAATCAAGTGTCATCCCCGTTGCAATTACTGCCACTGAAGAATTAT
AA
PEP:
>LH22102-PA
MVQRAACSSETSASLNGVRNGEREGETSGVGVATDAVVARGAVTDGEVTASLTRGSGGRFSLFRWFKRNRDSTVEKERRA
SARPNDDSVVRRRSSVYSSAESVDTFYSTTTVRSFAFHAGTLGRCDVLSLDILNQAAEVGPFAAGASKVSVGNKENDASA
AVASTLPTNVHSRRRDITARYSLHPSTTFGSCGNFPTPGLSSASRRHDERARTGCNGSARRRVHVKGKRKAPNPPGAVVK
VAEVDARETSARHSGRRKRRAPRPPLENRSAEEQSGLLITNGGNMEIEERKNADEGQSISNDTLVLQGGMLLSKKEVGNK
ELLKAAKKDDAGTSSVTVHQERAHSPIGGTLSAAMPRPWYKRSVFEHSRDSGSSKRGAFRSPATSVETKEECIGTNMTAT
ANYSVDASLSRLNFFHRGERHSDDRKRQEAKRKSGLSILTNISELDKEAAAIVQEEQARTRASMLLKSSQFADAFEKSDD
VNEEIVQDIVTSAMESSSPRRGTRALISKFNAISNITKVTVNANFFARRDQPGCRLDRDAARNSRFEQIGDWRNQRFSMQ
QDLGQNVRVDKDISRYFLPQQRPSRSKTEAAHADVKPTNIKIAIKEQNDQLMQDTSNRISLLQSQLAANRANEKIQKDII
SPVTEEKIRSRQEIRREKKEKESPRLNSEISRKFLLSRARNLAESTENALGLLREKTERDGERPEGTQKEFSDIFDEIDR
QLRSREFKLIERRPAVESDRAKVPKDEATSSKVAKVLDILVEAEKDGKTRSAIQSARSIPGKEASRLIDSDQKAKSSKTK
STVLNTVEDPITADLKEMLKEMKHSLPKRPKPKKVTSNDGDILEKVEKRSPVSANKTYVASVTSTRTDATSLNDYEADKQ
KVSSSVQTSGNIRRLNQPSTSAERPSTSGWKHENVLYRTSGKGSALVKNTFQLIRPRDFAEIEAMKTTKEVYKENTYANV
IEPSLYANAHVPPASPKQQPDPTRSKDISQNSNVKVPSNIVIENKITLNEDEFSEEDDNSRERNMNTLAINRLLRKLEGA
IASGHHQQAAGLAKELARLKIHCSVIRQRSAARLKDQSIKVNMYIEDKLAHQGPIPLQLPTGMTVAELKTKIHTEFEIPT
NVQRWIVGKNLADRDDVTLNELHAVDGLPVFLYLVAPELHIDNATQASKAQVAEDEVPEDLPQDPPAVVLQTIEENQEII
EREDVTLATNEDQRDTVEIDISEDVKMGRYEELISLENWDVIPNSEPIECPICFVTYGPREGVILRDCLHMFCRPCIANT
IAYCEEAEVKCPYRDADYTCESTLQEREIKALVEPEVYQQHLAKSIAQAENNAGNKAFHCKTPDCPGWCIYDDDVNNFLC
PVCGANNCLTCQHIDLISKVVHTGKNCKQYQQELQLSKETDQESRRTAAMLKEMVDRGEALACPTCAVVLMKKWGCDWLV
CSMCKTEICWVTRGPRWGPGACCRVKVIHPVAVNVVKMESSVIPVAITATEEL
Swiss-ProtRanBP-type and C3HC4-type zinc finger-containing protein 1
KEGG     K10630     
SUPERFAMILYSSF57850  RING/U-box superfamily     
Gene3DG3DSA:3.30.40.10     
PfamPF00240  ubiquitin; Ubiquitin family     
ProSiteProfilesPS50053  UBIQUITIN_2; Ubiquitin domain profile.     
CoilsCoil
ProSitePatternsPS00518  ZF_RING_1; Zinc finger RING-type signature.     

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