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Gene detail [Fasta]

Species Linepithema humile
GeneLH23168
Positionscf7180001005043:762388..770845[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH23168
sequence mRNA:
>LH23168-RA
ATTTTTAGATCATCTATTGAACAAAAAAAATTATACGCTGGCATCACCATGTCATCAAGATTGGATAGATTATTTATATT
GCTGGAAACGGGAACAAATGCAGTTACCAAAAGAGCAGCTGCACAACAGTTGGGAGAAGCGCAGAGATTACACCCTCATG
ATCTGCATCATCTATTGGCGAGAGTCTCGACTCTGCTGAAATCCCCACAATGGGACACTCGAGTGTCAGCAGCCCACGCT
GTGCAGGCTATACTTACCCAAGTTCCACCGTGGGACCCAGACCCCATGAAAAAAGAAAGCTCCACAGATGAATCAGAAGT
GAAGAAATGCAGAACTTCCACCAAATTGAGTTTGGAGTCCTTCGATATGGATAAAGTTCTAGCTCGTAGCTCACATCTCA
CTGGGTCGGAGGGCAGTGAATACGATTTGACTATATCAGAGGGAGAGCAACTATCGGTTCCCAATCAACAGGAGAAGCTA
GCCGCAAAGCTGGGTTTTCATCCACGTCTGATGGGTGTCGACACTGCTGATTTGTTTTCCGTTGAGGATTTCACGCCAAT
GGTGCAAGCGTCCAGTATGACACAAGCCGGTACAATGCCTGTAAGCGAAACTTTGAAACAGCCGGAAGGCTTAAGTAGAA
GAGAAATGAACAGAGCGAAACGCAAGGCACGTCAATCAGTGACGAAGCAGCGATCACGCGAACCGGACGATCATCGCGCC
AACGATGACCATTCGAATTCGATGAATGTTCAGTCGCCGGTGAATGATATCGGTGAGCCTGCGTTCAAAAAATTAATATT
AGAGGAAACGATCTCATCGGACACTGGACCAAAGTGCAGCACACCAAGCGAGCAGGTGTGCGGAGTGCCAGATGGAACTG
GATGTTGGCCAGATTCGGTTATACATTGGCCTTTAGAAGCTTTCGCGGAGAGCCTTTGTCAAGATTTGTTCAGTCAGAAG
TGGGAAGTGCGTCACGGCGCGGCAACGGCTTTAAGAGAACTCATAAGGCTCCATGGAAAAGGAGCAGGCAAGTCCAGAGA
TCAAACTCTGGAAGAAATGCAAGAAAGCCATTATCAATGGATAATCGACGCTGCTCTAAGATTATTGTGCGTGCTGGGCC
TCGATCGATTCGGAGACTTCGTTTCTGACCAGGTTGTCGCGCCGGTGCGAGAAACGTGCGCCCAAGCACTGGGATCGCTG
TTCAAATTAGTGTCCGGCGGGTCGCGCGCCAAAGATACAAACAAAATGTTATTTGGAATACTTTCCCTAATAATGAAACT
CTTGGGACACGACGAGTGGGAAGCCCGACATGGCGCGCTCCTCGCACTGAAATATTTACTAGCCGTACGAGACGATTTAT
TGGACGAGGTGTTGCCGAAGGTCTTTCCTACCATTATACAAGGATTGTCCGATCCTGTGGACGATGTGGGCGCGGCTGCC
GCAAGTGCACTTATACCAGTGGCTTATGCTCTCCCGCGATTATTGAAGCCAGCAGCGCTGGAAGCGATCGTGGTACGCCT
CTGGCAATTGTTAAAGGAACAGGACGATCTAGCTGCGGCTTGTAACAGTTTCATGGGTCTCTTGGCCGCGATACTTTCGC
TGCCAGCAGCACGCGCCTGTTTGGCGCCGCAGCCGCTATCGCAGGTATTGCCACGCTTATGGCCGTTCCTCAGCCACTCG
AGCTCGAGCGTGCGCAAAGCCACGCTGCAAACGCTGCAGACCTTGACCGGGGACGACGGCAGGCACACCGAGGACAAGAA
GGAACGGTGGGGCGAGGGCGGCGGTGTGGTCCTGCAGGAAGCGCTGTGGCATGTGTTTCAGTGCGTGCTAATCGAACATA
TTGCCGTGATACAGGACGTGGCCGAGCGTGTCTGGGAGAATCTAGTCGTACAGAGTGATCTCGAATTATTGCTACACGCG
GCATGCCCTCATGTCAGCACGTGGCTCTGCCTCGCCATGCAGCCGGAACATGTGCCATTCAATCCGACTCTGTTAATGAC
GGTCGCGAACCCCACGAAGGGCGTAAAGAATAATCAAACGGTTGCCTACTGCGACGCGCAATCGGACTCTAGCAATAACG
GCGGCGGGAATAGTAATGCGAATGCGAAATCGTTGTCCGAGCTGAAGGTGTACATCGGCGGGATCGAAACGGTGGCGCTG
AACGTGCGGAAGGCGAACGTAGTGCAGGCTCGTTGTCGAGCGTCTCGTATGTTGGGATTGCTGTCGCACTACGTGGTGCA
GCCGGCGCCGGGCGTCGTTTACACACCGGACATGCCCAGCCCGGCGCTCTGTTACGCCAAGGTGTTGCTGGCGCATCTCA
ATTCGCGATCGGCGCTGCAGCGCACCGTCGTGGGACTCACGATGTCTCATTGGGCGACGGTGGATTCCCTGAAGCCGCCC
GCGACACCAGACATACTCAGGGACAAACTGTTGGCTTGTTTGAACGAATGTACATACTACGATGAAATCGCGACCTCTTT
CACGAAATTATTGCACCAAAGTCGGGATTACAACGCGACCCTGAAACATTATAAATTGCCAGTGCCGGTCGACGTGGATT
CATCCGGCGTGATGACTCTTGATCAGATCACGGTACTCGTTGGAAAAACGATAACCGCTCTTTGCGCCGCAGGAAGTGGA
GCTGGAAATAATAGCGGCAATCAGATCAAATTGAAACCTAAGTTACTAGAGAGCCTGGAGGAAAGGAGGCGAGCGCTAAA
GATCGGAGCGGCCACGACGGCGGCGGAACAACAATCCTGGCATATTATGTCAATGGCCGCGCTCGCTGGCGCGGCCACGA
TGTTACACTGCCTTCCTCAAGCTCCGCAGCCGCTTAATCCGTTGGTGAAACCGCTGATGGAAGCTGTAAAACGCGAGGAA
AATGAAGAACTGCAAAAACTGGCTGCGAAGCATTTGTCTTGTTTGATTGAACTGTGCGTCGACAGAAAACCCTCTCCAAA
CGCAAAGATTTCCACCAATCTGTGTACGTTCTTGTGTTCCGACATTGAATTCACGCCGCGCGTATGTTGCGCCGGCGACG
CTGACGTTTACGACGGAATACTTACTTTGAATAATAGACAGAAACAAGCTGAAAGAATAGCGTATAATCGTGGTGCTGGC
ACCGGGGTCGGCGGTGGCAGAGGTCCCGGTCGACCGCCGACAACGGAAATACCCTTGGAAGAGTTACTGGCTTGCGAAGA
ACCGGAAGCCAAAGCCGCCAGAACACGTCGCCGCGGAGCCACATTAGCATTGACAGCTATAGCTACTCTTCTCGGTGCTC
AATTGCCGGTTCGTCTACCTCAGCTGTGGGATTTGATTTTGCCGAGTATACTAAAAGACGCAAACTGGCAGGATAAGGTA
CAAGAGGAGGAAGGAAATCAATTGATCTTTGGCTTGCAAGTGTTGGAGATTATGGCGCCGAGCTTGGACAAGTCCCTCTT
GCCGCCTGTGCTGGAGTGTCTGCCGCGTTTGTGCATTCTATTAGCGCATCCGTACAAAGCCGTCAGGCATATGACATCAC
GATGTATAGCTACGCTAGCCAGTTTAAATACGGAGAAGACAATGATACACATAAGGCATAGCGTCATACCGCTTCTGGAA
ACGACCGGCGGTGAGAAAAAATGTTCCTCAGGCAAAATGGCACCGAATGAGGTCGATTCGATACGCCAGGGAGCCGCGGA
GGCTCTGACTTGCATCGTCGAAACATTGGGCGTCCACGTGGTGCCGTACGCTGTACTCTTTATGGTGCCTTTACTCGGAC
GTATGAGCGATCAGAATCAAGCTGTAAGATTAGCCTGCAGCGCGACATTCGCCACACTTGTCCAACTGTTACCGCTGGAT
CCCGGCTCACTCGCGGATCCGCCGGATTTAGTACAAGAGAAGGCACAGGAGCGAAAGTTCCTCGATCAGCTCATAAATCC
CCGTAATATCCCCGACACGGAGCTGCCGGTTCCCGTAGCCGCTGAGCTACGCTCTTACCAACGTCAGGGCTTGAATTGGC
TCAACTTTCTAAATCGCTACCACCTGCACGGAGTTCTGTGCGACGATATGGGTCTCGGAAAAACGCTGCAAACTCTCTGC
ATCCTGGCGCTGGACCACCATCGCAATTTACAAACACCAACCAGCCTAGTGGTGTGCCCGCCGACTCTCACCGGTCACTG
GGTGTACGAAGCCGAGAAGTTCTTCAAGGCGCAGGATCTGTCGGTCATCCAGTACGCCGGCACGCCGCTGGAGCGCGACA
AACTGCGTTCCCGCGTGCTGAATTATCGGCTCGTGATCGCGAGTTACGACATCGTGCGCAAGGACATCGAATTCTTCGAG
GCGCACCAATGGAATTACTGCGTGCTCGACGAGGGCCACGTGATAAAAAACGGCAAGACGAAGAACGCCAAGGCGGCGAA
GCGGCTGCACGCTAATCACAGGCTCATCCTGTCCGGCACACCTGTGCAAAACAACGTACTCGAATTGTGGTCTCTGTTCG
ACTTTCTGATGCCGGGCTTCCTCGGCAGCGAGAAACAATTCGCCGCCAAGTATTCTCGTCCCATTCTAGCCTGCAGAGAA
CCGAAGGCAGGGCCGAAGGAGCAGGAAGCCGGCGCTTTGGCCATGGAGGCTCTTCATCGACAGGTACTGCCGTTCTTGCT
GAGGCGGAACAAGGAAGATGTGCTACAGGATCTGCCGCCCAAAATCACGCAGGATTATTACTGCGATTTGTCGCCTCTGC
AACGTCTACTTTACGAAGACTTCCGTACTCGTCATACGGCAACGCTCACCACCGGCTCTTCGTCTTCGAGCGATCTTCAA
ACTGGCCACGTATTCGAGGCGTTACGATACTTACGCAACGTGTGTAATCACCCTAAATTGGTGTTGAAACAACAACATCC
GTTATATCAAACGGTATGTGACATGTTGAAGCAGCAACAAAATACTCTGGCGGACATCGAGCACAGCGCCAAGTTGCCTG
CTCTCAAGCAACTGTTGCTGGATTGCGGCATCGGACAGCAGGCGCGTAATTCCTCCGCCGTCACAGAAAACTCTCAGGAG
CAGCAGTTGGTCAGCCAGCATCGCGCTCTAATTTTCTGCCAGCTGAAGGCGATGCTGGATATCGTGGAGAACGATTTGCT
GCGCGCGCATTTGCCGACGGTCACTTACCTACGTCTCGACGGTAGCATACCAGCGGCTCAGAGGCACTCCGTCGTGGCGC
GCTTCAACGCCGATCCGTCGATCGACGTTCTTCTGCTGACCACTCAGGTCGGCGGTATCGGATTGAACCTAACGGGCGCC
GACACCGTCATATTCGTGGAGCACGACTGGAACCCGATGAAAGATCTCCAAGCGATGGACCGCGCGCATCGTATAGGTCA
GAAGAAAGTAGTGAATGTGTACCGCTTGATCAGCAGATCGACAGTGGAGGAGAAAATCATGGGGCTGCAGAAGTTTAAGC
TTCTCACCGCGAACACAGTAATATCGACGGACAACGCCGCTCTGGAGACCATGGCTACCGATCAGTTGTTAGATTTATTC
TTGTTGGATAACGAAAAAGAGAAGAGGCAACCGGATCATCACGATGACGCCGCTTTGTCGAAGTTACCTGGCCTACCGGG
AATTAGCCGTTCTGTACTGGATATCCTGCCTGAGCTTTGGGAACAGCAACAATATGACGACGAATACGATCTCGACTCAT
TTTTGTCCACACTGAAGGCTGATAGCCAGTAAGCTCGTACCTCGTTAAATCAATGAACGTAGATTATAAAATTTGAGAAG
TTTATCGCGTGTCATGTAGCTTGAGGTTGG
PEP:
>LH23168-PA
MSSRLDRLFILLETGTNAVTKRAAAQQLGEAQRLHPHDLHHLLARVSTLLKSPQWDTRVSAAHAVQAILTQVPPWDPDPM
KKESSTDESEVKKCRTSTKLSLESFDMDKVLARSSHLTGSEGSEYDLTISEGEQLSVPNQQEKLAAKLGFHPRLMGVDTA
DLFSVEDFTPMVQASSMTQAGTMPVSETLKQPEGLSRREMNRAKRKARQSVTKQRSREPDDHRANDDHSNSMNVQSPVND
IGEPAFKKLILEETISSDTGPKCSTPSEQVCGVPDGTGCWPDSVIHWPLEAFAESLCQDLFSQKWEVRHGAATALRELIR
LHGKGAGKSRDQTLEEMQESHYQWIIDAALRLLCVLGLDRFGDFVSDQVVAPVRETCAQALGSLFKLVSGGSRAKDTNKM
LFGILSLIMKLLGHDEWEARHGALLALKYLLAVRDDLLDEVLPKVFPTIIQGLSDPVDDVGAAAASALIPVAYALPRLLK
PAALEAIVVRLWQLLKEQDDLAAACNSFMGLLAAILSLPAARACLAPQPLSQVLPRLWPFLSHSSSSVRKATLQTLQTLT
GDDGRHTEDKKERWGEGGGVVLQEALWHVFQCVLIEHIAVIQDVAERVWENLVVQSDLELLLHAACPHVSTWLCLAMQPE
HVPFNPTLLMTVANPTKGVKNNQTVAYCDAQSDSSNNGGGNSNANAKSLSELKVYIGGIETVALNVRKANVVQARCRASR
MLGLLSHYVVQPAPGVVYTPDMPSPALCYAKVLLAHLNSRSALQRTVVGLTMSHWATVDSLKPPATPDILRDKLLACLNE
CTYYDEIATSFTKLLHQSRDYNATLKHYKLPVPVDVDSSGVMTLDQITVLVGKTITALCAAGSGAGNNSGNQIKLKPKLL
ESLEERRRALKIGAATTAAEQQSWHIMSMAALAGAATMLHCLPQAPQPLNPLVKPLMEAVKREENEELQKLAAKHLSCLI
ELCVDRKPSPNAKISTNLCTFLCSDIEFTPRVCCAGDADVYDGILTLNNRQKQAERIAYNRGAGTGVGGGRGPGRPPTTE
IPLEELLACEEPEAKAARTRRRGATLALTAIATLLGAQLPVRLPQLWDLILPSILKDANWQDKVQEEEGNQLIFGLQVLE
IMAPSLDKSLLPPVLECLPRLCILLAHPYKAVRHMTSRCIATLASLNTEKTMIHIRHSVIPLLETTGGEKKCSSGKMAPN
EVDSIRQGAAEALTCIVETLGVHVVPYAVLFMVPLLGRMSDQNQAVRLACSATFATLVQLLPLDPGSLADPPDLVQEKAQ
ERKFLDQLINPRNIPDTELPVPVAAELRSYQRQGLNWLNFLNRYHLHGVLCDDMGLGKTLQTLCILALDHHRNLQTPTSL
VVCPPTLTGHWVYEAEKFFKAQDLSVIQYAGTPLERDKLRSRVLNYRLVIASYDIVRKDIEFFEAHQWNYCVLDEGHVIK
NGKTKNAKAAKRLHANHRLILSGTPVQNNVLELWSLFDFLMPGFLGSEKQFAAKYSRPILACREPKAGPKEQEAGALAME
ALHRQVLPFLLRRNKEDVLQDLPPKITQDYYCDLSPLQRLLYEDFRTRHTATLTTGSSSSSDLQTGHVFEALRYLRNVCN
HPKLVLKQQHPLYQTVCDMLKQQQNTLADIEHSAKLPALKQLLLDCGIGQQARNSSAVTENSQEQQLVSQHRALIFCQLK
AMLDIVENDLLRAHLPTVTYLRLDGSIPAAQRHSVVARFNADPSIDVLLLTTQVGGIGLNLTGADTVIFVEHDWNPMKDL
QAMDRAHRIGQKKVVNVYRLISRSTVEEKIMGLQKFKLLTANTVISTDNAALETMATDQLLDLFLLDNEKEKRQPDHHDD
AALSKLPGLPGISRSVLDILPELWEQQQYDDEYDLDSFLSTLKADSQ
Swiss-ProtTATA-binding protein-associated factor 172
KEGG     K15192     
SUPERFAMILYSSF52540  P-loop containing nucleoside triphosphate hydrolases superfamily     
Gene3DG3DSA:3.40.50.300     
PfamPF00176  SNF2_N; SNF2 family N-terminal domain     
SMARTSM00490     
ProSiteProfilesPS51194  HELICASE_CTER; Superfamilies 1 and 2 helicase C-terminal domain profile.     

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