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Gene detail [Fasta]

Species Linepithema humile
GeneLH20295
Positionscf7180001004985:3042232..3052077[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH20295
sequence mRNA:
>LH20295-RA
AGAGTTATTAGTGAGGATGAATTTGATAGCAGCGCATCGGAGGCAAGCAAATCTATGGAAAGCGATAGTAGCAGTGCTTC
GGAATGGCAAAGTGATTGGAGTAGTTCTGATGAAGTGAGTGAAGATACAAAGCAGTACAATGCTAAGCGTAAAGTTTTAC
CTAAAACGAAGAGGGAGACAACCGAAAAAGCTGGCCCCTCCTTATCATCCACTGCTAACATTAGTTCAGATAGTGGTGAC
GAACAGTCAGAAAAATGTCCCATATGTCTACTGCCATTTAGCAAACAACAAATCGGCATTCCATCGGTTTGTGAACACTG
CTTTTGCTTAGATTGTTTATTGGAATGGTGCAAAAACATTAATACCTGCCCTGTGGATCGTCAAACTTTCACTGTGATCT
ACGTTAAAGATCAACTTGAAGGCGAGATCATAAAACATTTACCTGTAGAAATCGTGCCGCGCGTCGAAAATCAAGTACAA
GATGATCCAACATTTTGCGAAGTATGTCATCAAAGTGACAGAGAAGATCGAATGTTACTTTGTGACAATTGCGATCGCGG
CTACCATTTGGAATGCTTAACACCACCAATGACTGCAGTTCCCATAGAAGAGTGGTATTGTCCGGATTGTTTGCAACGCT
CGAGCAGATCGGTATCAAACTTTGTACCAACTCTTATGATACCGCGACGTCCTGGTCGACGTATCCTTCAATGGAATGGG
AGAGATGTCAGCGAATTATCAGGCATATTTAGAATATTACCTCATATTCACGAACGTTCATACGTACGTCGTAATCGCTC
ATACATATCTCGCATTCGCAATCGCACGGTCAGCGAAATGCACAATCGTGCTCCGACGGACATTTCCGAGCAATTTGATC
CAAATCTGCCGTCTACTTCATCCGGCGTTGATTCTATCGGTGATAATAGTCGAAGTCGTTCTCCGAATATTTTAGAAGAT
AGTGCTTCGCATATCCGCTCAAAAACGAAATCCAAAACGACGAAGAAAAAGAAGAAGCACGCGAAAAGTTCGAATAGAAG
ATCCAATAGCCTAGTTCGAGAAGTGCGAATCAAAGAATTCAATGATGACGGCGAAGAGGAAGAAATAGTGACGTATGTCA
AAGTCGCATCATCTACATCGAGGAGGAAGTGTAAGAAAAGAGCAAAGAAAACGCGCAAGAGGAGAAAACACAAACGACGT
GCACGCAATCAAGCGGTGGCTAGTACACGAACAGTAAAAAGAAGATTAGCCTCCACGCTGGGCATGCAGAAGCCAAAAAT
TCCGCTGCTTGTGCCTATCATGAAAAACAACACCGCCATTCCTGATAGAAGCGCTCTGACCAGTGCCAGATACAGCGCCG
GTATACCTCAAATCAGTCTCTTCGGGGATAATCTGGGATTAGATTACAGTCCACCTGGGTCGGACGATGAGTATTCCATT
GGAAACGGCCCGATGATAAACATACGACAACGACGCTCGGCGGTGCCGTCGATCAGACGTCGCACCGTTTTAAAAACTAT
CGCCAACCCGACCGACGACGCGGATAATGACGTGAACACCGCGGATCTGCTAAGTAGCATAATGAACACGATGGAGCTGT
GGCACTCGACGAAGAAGAAGGACGACGTGATCCTGAAGGCCGACGGCACGCTGATAGTGAACAATCCCAACAAGGAGAAC
AAGCACAGCATCAACAACAACGAGAGTCCGAAGAAGGAAAAGCAGGAGGAAGTGACGCAGCGCAAGGAGGTGATTCTGAA
AGAGGTGGACACGCCGCTCGATCTGTCCAACCACTGCGGCGGACCGCCCATGTTTGGCGCTCACGCGCCGCCGCCGCCGT
TCCGCAGCCGCAATCCGCAGCATTTTCGCAACGAGCGGCTGCGTTTTCCACCGCCGCCGCCGCCGCCGCCACCGCCGCCG
CCGGCCGAGCGACCGTTCAACTACACGGAGAGTGGCGGCAGCTTCGAGCCGAGACCGCCGTTTCCGCATGCGGCGGATCG
ATTTCCTCGGCCCAGACCATCTTCCTTACCGCCATCCGCCGGTCCGGCCGTGGCGCAGCCGAGTCCGGATCCTCTGAATG
TGCAACCGGCGCACGCACACAACAATCTACCGTCAGTGAGTTTGCCGGAGGACGTGACGCGGAATTATCAATCACCCGAG
CAGAACGATCGCGTTATGGCGCCGGAGCCGGTGGCCGCACCGGCTTCCGCACGACAGGACAACGACGACTGCGATATCTA
CTGCGACATCGAGCCGCCGTCCAAGCCTGATTGCGACGCGCAGGATGAGCATCACAGCAACGGCTCGATGATTCTGCTGC
CGCCGCCGGAACCGCCGTCCGGCTTGCTGGACTTTGAAGAAAACTCGAGGAGCGATAAGGACAACGATAGCGAGCAGGAG
CTCGTGATCGACGACAGCCACAAGGAGGACGCGCCGAAGGAGCTACCGTGCGGCGACAAGTACGATCCGTTTGCGGCCGA
CAGTGACAGCAACGACGACGCGGCCGCTACGCAGGAGAAGGCGCTGCAGAAAGCGGAAACGTCGCGAAACAGCATAGACA
GCTGTAACATACCGATGCCGGTTACGCCGCCGCTGCTGTCAACGTCGGGTTATCAGCCCGCGGCTGCTGCGACGTCGGCC
GAGAGCAGGGAGCGGCAGGAACCTATTCGACTGACCGCGTACGACGACGACGACGACAACAATTCGCAGTCGGATTGCCC
GAACTTCTCCATTTACTCCTCGCAGACGATGGACGTGGCCAGGCATTCGGAGCAGGAGCTGTCGCAGCAGCTCGGACCGC
TTCAGCCGCCGCCGCTGCCGCCCAACATTCCCGACGACGATGACATCATCGTGGGCGACGTCCAAGCTTGCGACATGCCG
GACGCGCCTCCGGAGCCAGCCGATCCGTACACCGACGAGGCGATAAACTTCGAGGAGGAATTGAACACGTCGTTGTTGCG
CAAGGAAAAGGAGATGGAGGACGGCGAGATACTGGACGAGAGCAAGCTGAGCGCGAAGGAGTGCGGCGACAAATCGAAGG
AGGAAAAGGAGGACGACAGCAAGAGAAAGAAGAAGAAGGACAAGAAGGAGAAGAGCAAGGAGAGCACGGAGAAGAACAAG
GAGAACATTTCGTCGGACAATCTAGTTGCGTGGAAGAAGCTCTCGAAAAGCACGAAGGAGAGGCCGTACCGCGATAAGGA
CAAGCGATCGAAATCGAAGGAAAAGGAGAAGGAGAAGGACAAAGACAAAGATAAGTCTTCCAAGAAAAAGACGAAGGAAG
TGGGCAAGAAGAAGGAGAAGAGGAAGGAGCTGCCGCGATACGACGTGAGGAAGATCGTGGCCGATAAACCCCGGAAGGAC
GAGTACGGCAGGGACATCCGAGAGAAGTCGCGCAGCAGATCCAAGAGTCGCTCGCCGAACAAGATCCGATCCGGCTCGAG
GGACCGGCGAAGTCGATCGTACTCGAAGGGACGGTCCAGAAGTAGGTCGCGTCTGCGGCTTTCCTGGTCGAGAGATCGCG
GCCGATCGTACTCGAGATCGTGCCGGTCGACCTCGCGCAGGAAATCCACGTCCCGCACCAGACGCAGATCCCCGCGAAAG
CGGTCCATGTCTCGTCGAGGATCCCTCTCGAGACGGCACTCGGTCTCGCGAAGGCGGTCGCGATCATTGTCGCGGAAGCG
ACGGTCGCTCTCGCCCAGACGGCGATCGAGACGCTCGCCGTCGAGATCGCGCGACAAGCGGAAGGACAAGACGAAGAAGT
ACAAGTCGCGCAGTCGCTCAAGAAACCGGAAGCGATCGCGCAGCAAGTCGCCGAAGAGAACGTCGTCTAAGTCGCGTGAG
AAGAAGCACAGCAAGAGGAAGGCGCACAGCCGGTCGAGGTCGAAGGGCAAGTCGGTTTCGCGCGATCGCGATCGTAACAG
GAACTGGGAGCAACTGAACGAGAAGAGCGTCGATCGCGAACAGCAGTTTACGCGCGAGCAGGAGGAGCACGAGCGCTCGT
GGAGTGCTCAGTGGACGCCATCTTGGTCGCGATCGAGATCGAAGACGCCGCCGCACATTCAACAGGAGCGACTCAGCTCC
CGTAACTGGTCGCCACCGCCTGTGCTAGATAGCGTATCACCGAAGAATCTGACCGTTATATTAACGAACAAGGAAGCGAT
AAAGAAGAAGAAGAAAGAGCGCCGGAAAGAGAGTCGAAAGTCCAAAGAAACGGAGAAACGACGAAAGGGCAAGCGCAACA
GAACACCACCGCCGTCTAAGGAGGTCTTTGCCAGTGGCGATAACATTCTTGTGAGTGTTTGCTTTAATAAAGATAACGAG
ACGAATCCGACGGCCACGCCGGAACTACCGTCAAACACCATTCCGCTCGTGCCGCCGATAAAGCGACGACGAAGAGAATC
GGTTCAGACGGAATCGGCGCCGTCTGTGAAACGATCGAAGAAGGAGAAGTCGAAGGACAAGCGATCGAAGTCGCCGAAGA
TAAAGAAAGACAAGAAAAAGAAGTCTAAAGCGGCGGAAATCGCGGCGACGAAGAAGCCCGTGGCCGTAATCGATCTGGAT
CAGTCGCCGTTCCGCGAGCAAACGCCGTCGCCACGCGACGTCATCGTTCTAAGCGACGACGATGACAAGCAGGCGCAGGC
GGCGTTAGCCGCGTCGCCGGAGCAGTGTCCGCCGTCGCAGGCGTCGCCGCCGCGCGAGCAGTTCGTCTCACAGGGTCCGA
AGACGCCGCCGGAACCGCAGATCAAGTTCTCCATAAACAAGCAGCCCAGCAATCTCAGACCGTCCCTGATAAATCCGCTG
CTGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGATGATGGACGAGCAAGCCGAGGAGGAGTTGGAGATGCGGGCGCAGGA
GGAGCTGGAGTTGCGCTTGAAAATCGGGCCCAACACACCGCCGGAACCGCCCACGTCCCCGCCAACCTCGCCGGATGCGT
ACGATCCCTTCGAACCGACAAAATCGCGCTCGCCGACGCCCGACGCGAGCCAGGAGGCGACGCCGAACGACGAGCACGAT
CGGGCGCAGCGCAACTCGCCTAGGAAGCACGACGGGGCGGCGGACACTCCGTTGCCGTTGGACGAAGCCAACCAGCAGCA
GGATCAGCCCAGTCAGGAGAAGCCGACGGAGAAGCCAAAGATAATATCGATGGTGACTATTAAAAGGCCGTCGCCGCCGA
GGGACGTCTCGGCGTCCCCCGCGCCGGAGAATCAGACTAATATAGCGCAGTCGTGCAACAGTCCGCCCAAGACGCAGCAG
AATCCGCAAAATGTGCAATCGACTGCCAATCCGTTCGCCACCATCAATCCCGTACTGGCGACGGTCGCGGCCGCGGTGCA
GCGAAGTTTCAACACCAGCACGCCTAATTCGACGCAAAGAACGCTGTTGCAGCCTAATCGCATCTCGCCGAGCAGTCAGA
CGAAACAACGTACAAACGACAGGCCGCAGCTTCCCAATGTGTTCACGAATTCTGCGAAATCATCCACCATGGCGCGGTCC
TCCAAGTCCAACCAGAGCAAAAACAGTTCGACGATAGGGCAGAATGGCAGCGATGCGACGATGGACACGACGAACGACAA
TGTCGTCGACATGTCGTCGCCTTATTCGCCAGGATCGACCCTGAGCGACGGTCTCTTCGATCCGCCCAGCCCCGCGAACT
TCAATAATTCGCCCGCTGCGAATGCACCACCGCCCGCGGCGAAAACCAACGCACCGAAAGTGAACAAAAGCACGGACAAG
AAAGATACGTTCGACGCACTGTTCGGCGGAATATTGCCGCCCGTGAAGACTGCAACCAAGAGCAAGAGTAAAAAGGCCGC
AAAGGAAAAGACGAAGAAATCTACGAATCCCAAGGTTGGCGTACGTATGGACGAAAATCAGCTTCAAATCCTGGACGATC
TTCCTAGTTCTGCCGTAGAAATGCAAGTTAAAGACAAGTTCCTTAAGAAACTAAATCGCCAAGAAAGAGTCGTCGAGGAG
GTGAAATTAGTTCTCAAACCCCATTACACCAAAAAGCACGTTACGAAAGAGGAATATAAAGATATCATGCGCAAAGCTGT
ACCTAAGATATGCCACAACAAAACAGGCGAGATCAATCCTAAAAAGATAGCACATCTAATAGAAGCGTACGTCAGAAAAT
GTCGAAACAACAAGAAGAAGACGATTCCTTCTACAAAGATAGCGAAACCT
PEP:
>LH20295-PA
MESDSSSASEWQSDWSSSDEVSEDTKQYNAKRKVLPKTKRETTEKAGPSLSSTANISSDSGDEQSEKCPICLLPFSKQQI
GIPSVCEHCFCLDCLLEWCKNINTCPVDRQTFTVIYVKDQLEGEIIKHLPVEIVPRVENQVQDDPTFCEVCHQSDREDRM
LLCDNCDRGYHLECLTPPMTAVPIEEWYCPDCLQRSSRSVSNFVPTLMIPRRPGRRILQWNGRDVSELSGIFRILPHIHE
RSYVRRNRSYISRIRNRTVSEMHNRAPTDISEQFDPNLPSTSSGVDSIGDNSRSRSPNILEDSASHIRSKTKSKTTKKKK
KHAKSSNRRSNSLVREVRIKEFNDDGEEEEIVTYVKVASSTSRRKCKKRAKKTRKRRKHKRRARNQAVASTRTVKRRLAS
TLGMQKPKIPLLVPIMKNNTAIPDRSALTSARYSAGIPQISLFGDNLGLDYSPPGSDDEYSIGNGPMINIRQRRSAVPSI
RRRTVLKTIANPTDDADNDVNTADLLSSIMNTMELWHSTKKKDDVILKADGTLIVNNPNKENKHSINNNESPKKEKQEEV
TQRKEVILKEVDTPLDLSNHCGGPPMFGAHAPPPPFRSRNPQHFRNERLRFPPPPPPPPPPPPAERPFNYTESGGSFEPR
PPFPHAADRFPRPRPSSLPPSAGPAVAQPSPDPLNVQPAHAHNNLPSVSLPEDVTRNYQSPEQNDRVMAPEPVAAPASAR
QDNDDCDIYCDIEPPSKPDCDAQDEHHSNGSMILLPPPEPPSGLLDFEENSRSDKDNDSEQELVIDDSHKEDAPKELPCG
DKYDPFAADSDSNDDAAATQEKALQKAETSRNSIDSCNIPMPVTPPLLSTSGYQPAAAATSAESRERQEPIRLTAYDDDD
DNNSQSDCPNFSIYSSQTMDVARHSEQELSQQLGPLQPPPLPPNIPDDDDIIVGDVQACDMPDAPPEPADPYTDEAINFE
EELNTSLLRKEKEMEDGEILDESKLSAKECGDKSKEEKEDDSKRKKKKDKKEKSKESTEKNKENISSDNLVAWKKLSKST
KERPYRDKDKRSKSKEKEKEKDKDKDKSSKKKTKEVGKKKEKRKELPRYDVRKIVADKPRKDEYGRDIREKSRSRSKSRS
PNKIRSGSRDRRSRSYSKGRSRSRSRLRLSWSRDRGRSYSRSCRSTSRRKSTSRTRRRSPRKRSMSRRGSLSRRHSVSRR
RSRSLSRKRRSLSPRRRSRRSPSRSRDKRKDKTKKYKSRSRSRNRKRSRSKSPKRTSSKSREKKHSKRKAHSRSRSKGKS
VSRDRDRNRNWEQLNEKSVDREQQFTREQEEHERSWSAQWTPSWSRSRSKTPPHIQQERLSSRNWSPPPVLDSVSPKNLT
VILTNKEAIKKKKKERRKESRKSKETEKRRKGKRNRTPPPSKEVFASGDNILVSVCFNKDNETNPTATPELPSNTIPLVP
PIKRRRRESVQTESAPSVKRSKKEKSKDKRSKSPKIKKDKKKKSKAAEIAATKKPVAVIDLDQSPFREQTPSPRDVIVLS
DDDDKQAQAALAASPEQCPPSQASPPREQFVSQGPKTPPEPQIKFSINKQPSNLRPSLINPLLEEEEEEEEEEMMDEQAE
EELEMRAQEELELRLKIGPNTPPEPPTSPPTSPDAYDPFEPTKSRSPTPDASQEATPNDEHDRAQRNSPRKHDGAADTPL
PLDEANQQQDQPSQEKPTEKPKIISMVTIKRPSPPRDVSASPAPENQTNIAQSCNSPPKTQQNPQNVQSTANPFATINPV
LATVAAAVQRSFNTSTPNSTQRTLLQPNRISPSSQTKQRTNDRPQLPNVFTNSAKSSTMARSSKSNQSKNSSTIGQNGSD
ATMDTTNDNVVDMSSPYSPGSTLSDGLFDPPSPANFNNSPAANAPPPAAKTNAPKVNKSTDKKDTFDALFGGILPPVKTA
TKSKSKKAAKEKTKKSTNPKVGVRMDENQLQILDDLPSSAVEMQVKDKFLKKLNRQERVVEEVKLVLKPHYTKKHVTKEE
YKDIMRKAVPKICHNKTGEINPKKIAHLIEAYVRKCRNNKKKTIPSTKIAKP
Swiss-ProtPHD and RING finger domain-containing protein 1
KEGG     K17586     
SUPERFAMILYSSF57850  RING/U-box superfamily     
Gene3DG3DSA:3.30.40.10     
PfamPF13639  zf-RING_2; Ring finger domain     
SMARTSM00249     
ProSiteProfilesPS50089  ZF_RING_2; Zinc finger RING-type profile.     
CoilsCoil
ProSitePatternsPS00518  ZF_RING_1; Zinc finger RING-type signature.     

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