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Gene detail [Fasta]

Species Linepithema humile
GeneLH20072
Positionscf7180001004985:633571..654413[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH20072
sequence mRNA: 
>LH20072-RA
ATGCGCCCGGCGGGGATATCGAAGTGGGAAAATTTATCTCGGAGCGCGCCTCCGCGAAAGGTGGAAATCAGCAGTCATCC
AAACAATAGGGAAATCGAGGTGAAGGTGGGCGAATCACGGCGCTTGGAATGCATCGTCAGATCGGCCAAACCGGCCGCCT
CGATCATTTGGTATCGTGGAAACGTGCAGATCAAGGGCGGTGACACCACCACCAACGCAATCTCTATCGAGGGTGACAAG
GATGCGAAGCCCGGAGAGACGTCCAGGGAATTGCTCAAGTACGACACTCATGGTTCCATTACCATCGTGCCTACGGCGGA
CGATAATGGGATGGATTACACCTGCGAGGCTAGCCACGAGGCAATACCCATAGACAGGCCCATGCGGGCTACCATTAGAC
TCTCCGTTTTCTATCCACCTGGTCAACCGTACATCGAAGGCTACACCGAGGGCGAGACCGTGCAACGCGGTCAGAATGTG
GAGCTCTCCTGCCGATCACGCGGCGGAAATCCGCCGGCCGATATCATCTGGTACAGGAACGGCGAAAGGATCTCGTCGTT
CACTCGCCGGGAGAACACCTTCAGCGAGAACGTGCTCTCGTTCATAGCCCGCGCGGAGGACGAGAAGGCCCGCTACAGAT
GCGAGGTCTCCAACGTCATGAGCGTGCAGCCCATGAAAGTGCACGTCGATCTCACTGTGCTTTTTGCGCCTGCTGGAGTC
ACCATTACCGGCCCGACGGAGGCGAAGGCGGACGACCAGGTGCACATTACCTGCATGACGGAGAACTCAAATCCGCCCGC
GGACATAAAGTGGACGGTGGACGGGCATAATTTCGAGAGTAACAGCTCGAAGACGGAGCCAGCACCGAACGGCGGCTGGA
TCACCACCTCGAACGTGACGTTCAGCATTAATCGCAAGAGCCGTAGCATCGTCGTCATCTGCCACGCTTCCAACGCCAAG
CTCACGGAGAACGTGGTCGGCACGCACACCATCAACGTGATATATCCACCTTCGAAACTAAGCGTTACCGGATACGAAGA
GGGCACGACAATAGTGGCCGGGACAGTGCTAAAGCTCATGTGCATCGCCACGGCGGGTAATCCATTGGCCACGTTAACAT
GGTACAAGAACGACCGCAAGGTCTCACTTGGCACAGTGAGACAGCGAAATCATGCTGTCTCCAGCGAGTTAGCGATACTC
GTCAACGCGTCTGACAACAATGCCCATGTGCGATGCGAAGCGACAAATTCCGCTACCGAGATACCCCTGCTCAAAGTTCT
CGTGCTAAAAGTCAATTTCCCGCCCGAGAGGGTGAAGATTAACCGCGAACCCCAGGACTTCCACGCCGGTCAAGAAGGAC
GCATAATCTGCGAATCCAGCAGCAGCAATCCCGCTGCCGAGATGTCGTGGTGGAAGAACGGGATACCGGTAACCGGCACC
AGGAACGGCACCAAGCCCGGATTACACGGCGGCTACCTATCGTTCGTTGAGCTCTCGCTCGACTTAACCGAAGACATGAA
CGGCGAGGTGTACACCTGCGAGGCCAAGAACACCGAATTGGGGAGGTCTATCCACGACGCTACGACGCTGGACGTGTTGT
ACAAACCGATATTCTCGCCATTAGACCCTTTCGAATTAACCGGTCTGGAAGGAGAACCCTTTGTGATTTCCGTATCGGCG
AGGGGCAACCCTAATACAACGGAATATACGTGGACAAGAGACGGTCTACCGATAGTTAGTAGCAATAGGAGAGTGACCGC
GCACGGTTCCACGCTAAATATCACCAAATTGGATCGTCACGATGCCGGCACGTACATATGCGAAGCGCTGAACAAGGAAG
GAACCACTTTTTACCAGCTAAATCTGACCGTGCAATATCCGGCTAAAATCAAACGCATTTCCTCGTCGGGGATAGTTTAT
CCACCGGGTATCGAGGCGAAACTTTTCTGTGAAATCGACGGCAGCCCGATCGGCGACGAATTCGTCACGTGGCAAAAAGT
AGGATCAAATCTGGAACCAGGACGTTACTCGACATCTTTCGTAAATCGAACGTCGTACCTTCACATAGAACGTCCTAGCC
AGCAAGACGTCGGCGAGTATCTGTGCAAAGTCAACAACGGCATCGGCAATGTAACATCGGATCCTATCCTGTTTATTACT
AATTTTAAACCGGAAATGACGAACACCCCGTTGACGCGAAAGGCAGCGGCGAACAAAGGAATAAGCGTCCATTTGTACTG
CAAAGCGCGAGGATCTCCATTGCCGCGTTTCAGTTGGATCTTCAATAGGAAAACTTTATCGCCGAACACAACCGAGAATA
AATACAGTATCACTCACAGCGACCTTTCTGAGCTCTACTCCGAAACAGTGTTGACTATCCATAACGTGAAGGCGCAGGAC
TATGGAAAATATGAGTGTCGCGCGCAGAATAAAGTGGGGCAATCCTCGGAGGACATACTTTTGGACGTCACGTCACCGCC
GGATAAGCCGAGCGATCTGGAGGTCTACAACGTCACACACGATTCGGTGACGCTGATTTGGAAGCGCGGTTTCGACGGCG
GCTTGCCGACGTCCTATCAAATACGATGGCGACAGGCGTTGGATTACGAGGCTCGCTACTACTACCTGGACATCTCGCCC
GGTGAAAACAAGGCCACCATATCCGGCCTGTCGCTCGGGACTTATTACGTGTTCAGTGTGAAAGCTATCAACGAGAAGGG
AGATAGTGGCTTCTTGCCAGACCTCGTCAAAGTTCAGACACTTCGGCCCAATAAAGAGGAAAACCTGCCGGACATCCTCT
TGGAAAAGGGCGACTTTCCGATGAATTATATCTATACGTTAGCGGCGACTTCCCTCATCATTTTTATCGTTAATGTCTTC
ATCATGTTGTGGTACATAGTACGAAAACGAAATAAAGCTCGTATCAACAAGTCGCAGACCGCGGATATGTATGCACCGTC
CACCGTCAACGGCGACACAATGACCGGTGAATTAAGTTCCATGTCGGACGAGAAGAGCGACGTCAACTTCGACGCTAACG
ATTACGTGCAGGACGAGGGGCGCAAAACCGCAGCTAGTACGTATTTAATAGATCAAACTATGCAGGACTACGGGAAAGGC
GGTTTAGAAATGCAGGTGCATCAGGGCACCCTCGGTCGTCGCAGCAATCATATGCAAACATCCATGAACATGGATTCGCC
GCCGCAGCGAACCACTGCTAGTGGGACACTTTCAGTATCGAAGTCGAGTTACATCGGCAACCCGAGCCCGGCGCCGCCCA
ATGACGTAAGCTTCTACAGCGTCGAGATGGACAACGGCGGTCGCGGCTACATGAGCTACGACGGCAATCCAAGTCCAGCA
CCGCCGCCGATCGGCGATCCGTCTGGCGGACCCTACTATCCTACATCCTTAGGTTCGACCGGTCACATAATGGGTGGGCA
CCTGGGCGCCGGCACCGGCACTTTGACGCGCACCAGGACGCTGCCACGTCCGGTGCCGCCGCCCGATGTCACCGTGATGA
CCGCGGGCACGAAATCGCCGATACCGCCGTCGGTGCCGCCGCCACCCGCCACATTCGCCCGCGCCGGCCCCAACAACGCC
GGACCTCATCCGCACGCACACACGCATCCTGCCCCGCCGCCACCACCCTGCCAGAGTCATCCGCTGTCCACGTTCGCGGC
AACGCCGACCTACTCCGACATCGATGGACATCTTGTCTGA
PEP: 
>LH20072-PA
MRPAGISKWENLSRSAPPRKVEISSHPNNREIEVKVGESRRLECIVRSAKPAASIIWYRGNVQIKGGDTTTNAISIEGDK
DAKPGETSRELLKYDTHGSITIVPTADDNGMDYTCEASHEAIPIDRPMRATIRLSVFYPPGQPYIEGYTEGETVQRGQNV
ELSCRSRGGNPPADIIWYRNGERISSFTRRENTFSENVLSFIARAEDEKARYRCEVSNVMSVQPMKVHVDLTVLFAPAGV
TITGPTEAKADDQVHITCMTENSNPPADIKWTVDGHNFESNSSKTEPAPNGGWITTSNVTFSINRKSRSIVVICHASNAK
LTENVVGTHTINVIYPPSKLSVTGYEEGTTIVAGTVLKLMCIATAGNPLATLTWYKNDRKVSLGTVRQRNHAVSSELAIL
VNASDNNAHVRCEATNSATEIPLLKVLVLKVNFPPERVKINREPQDFHAGQEGRIICESSSSNPAAEMSWWKNGIPVTGT
RNGTKPGLHGGYLSFVELSLDLTEDMNGEVYTCEAKNTELGRSIHDATTLDVLYKPIFSPLDPFELTGLEGEPFVISVSA
RGNPNTTEYTWTRDGLPIVSSNRRVTAHGSTLNITKLDRHDAGTYICEALNKEGTTFYQLNLTVQYPAKIKRISSSGIVY
PPGIEAKLFCEIDGSPIGDEFVTWQKVGSNLEPGRYSTSFVNRTSYLHIERPSQQDVGEYLCKVNNGIGNVTSDPILFIT
NFKPEMTNTPLTRKAAANKGISVHLYCKARGSPLPRFSWIFNRKTLSPNTTENKYSITHSDLSELYSETVLTIHNVKAQD
YGKYECRAQNKVGQSSEDILLDVTSPPDKPSDLEVYNVTHDSVTLIWKRGFDGGLPTSYQIRWRQALDYEARYYYLDISP
GENKATISGLSLGTYYVFSVKAINEKGDSGFLPDLVKVQTLRPNKEENLPDILLEKGDFPMNYIYTLAATSLIIFIVNVF
IMLWYIVRKRNKARINKSQTADMYAPSTVNGDTMTGELSSMSDEKSDVNFDANDYVQDEGRKTAASTYLIDQTMQDYGKG
GLEMQVHQGTLGRRSNHMQTSMNMDSPPQRTTASGTLSVSKSSYIGNPSPAPPNDVSFYSVEMDNGGRGYMSYDGNPSPA
PPPIGDPSGGPYYPTSLGSTGHIMGGHLGAGTGTLTRTRTLPRPVPPPDVTVMTAGTKSPIPPSVPPPPATFARAGPNNA
GPHPHAHTHPAPPPPPCQSHPLSTFAATPTYSDIDGHLV
Swiss-ProtNephrin
SUPERFAMILYSSF49265  Fibronectin type III superfamily     
Gene3DG3DSA:2.60.40.10     
PfamPF08205  C2-set_2; CD80-like C2-set immunoglobulin domain      
SMARTSM00408     
ProSiteProfilesPS50853  FN3; Fibronectin type-III domain profile.     
OrthologiGroup-00262    iGroup-00262     

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