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Gene detail [Fasta]

Species Linepithema humile
GeneLH20036
Positionscf7180001004985:357289..362588[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH20036
sequence mRNA:
>LH20036-RA
ATGTCTCGCAGTCTGCCGGACAGGGTGGCGGGGCTTTATTATGCCCATGGCCTACTCTGCTCTTCCCATCCTATAATCTT
GCTCTCGGTCGCAATATCGGGTTATCCGCTCCTGAATTTGCCCATGCCGGGCAATGCTCCGAAAACTATAATAAACAACA
CTGTCATACCAGTCAACGGCACAGAAACATCAGTATTGTACGTTCAACAAGTAGTGCTAAGAGTTGGTGTGATGCCGTGG
AGCGAAGACCTAACATTGATGGATGCCTTCAGAGGGCCTCTCTACGAAGTGTTCAATCTCTTGGAGATCATACAGAATTA
TCAACACCCAGAAACATTGAAAACACTCGGCCAAGTATGTTTGCACATTGAAGCGGTGAAGAAAAGAAATGGCAAGAAAC
CAGAAGTTTTACCGGAATACAACTGTCTTGTCCTGTCGCCTGCAAATCTCTGGCAACAAAGCTTAGAATTATTTTCTCAA
GATACAAATCTCATCAATACTATATTTTCATATCAGAGGGGTAAAATAAGTCTTGCAGAAATAATGTTTGGAATGAGTTT
AAAAGAGACAGGAGTAAAAAGATATCCTGCTCGAATTCGTCAGAGAATTCTTCAATACGCTGTGACCATTTATTTGAGAG
AATACGATCACGAATTTATCAAGGGATTACAACATCGATTAAGGACTTTTTACCATCTTCATCAAAATGTCGACAATATC
ACGAATGTGGATACGCACGATGAGATGTTAAATATTTTTTATCCCGGTGAATTTAATTACAGTGAATTCTTCCCACTGAT
GATGACTTTCCTCGCCTTATTTTTCTACGAATACTTCCAAGTGCGAAAGATAGAATTGGTAAAGTCTAAAATCGGTATTG
CGTTTAGTGCTGCAGTGACGGTGATGGGTTCGCTGTCCATGACCATGGGCTTGTGTTTCTTTTTCGGTTGGACTGTGAAT
ATGAGCGCCAAAGTGTTTCCGTACTTGGTAATAATTTTCGGCCTCGAGAACGTTCAGGTGTTGACCAAAAGTGTCGTAAG
CACACCCGCTCATCTGGACGTGAAGATACGCGTCGCTCAAGCCTTATCGAAGGAAGGCTGGTCTATTACAAAGAATCTAT
TGATGGAAATGACGATTCTCACTGTCGGATTGTTCACCTTTGTGTACGCTATTCAAGAATTTTGCATATTTGCCATTGTC
GGATTAATGACCGACTTCTTTCTGCAAATGGTATTCTTCTCGCCTATCCTGGCAATCGACATCAGACGAACGGAGCTGTC
TAACGAGAACTCGAAATTTCACATATCGCATATTCCAACATTACGCAGGCAACAATTCACTACTACTATCACCAATAGAA
AACCTCATATATTCCGCTCTAAGTCTCATCCGCGATTGAACGGTCTATCGGCCGGTCCGACCAACGTCATCGCTCCGAAT
ACGCAGAATACGCACACGCTGGGCAAAATTCCGAAACGTTTGAGATTGGTGCACTTCTGGGCGCGAACGCGGATCTTTCA
GCGCGCGTTTATGGTAGGGATGGTCGTATGGATCAGCGTGACCATCAACAATTCCGGTATTATCGAGCATGTGATACACC
TTAGCGAGACACTGAAGCCGGAAAGCGATATTGACGGATATACTATAGATAAGCCGCAATTGTTGAGCAATTATGTTGAG
CTAAATACGGTGACACCTATATCCGTGTCATCCGCAACTATAGTGCCCGATAATTTGAACGAACAGGATTTAACTAACAA
TGCGACCGAAGAATTGAACAAGCTAAAGCCTGTGGATTTTCCACCATGGAACAGCTTATCGCTGTACCATTGGTCTTCGA
TTCTCTCGATGTACAACGTGTCGATTGCTGGTGGACGAGTGACTATACTTCCAACTATAAAATTATCGCATGCCGTGAGC
CCACAAGTAGCGATACAAATTAGCAATCCGAATGACGTTCAACATTTTCAATGGCAGATCCTCGCTACCGCCGCGCTCGA
TCCTTTAGACTTTTCCGGTTTGTTCATAAAAATTTGCCAAAAATTGGTTGTTCGTTACATTAGTCACCGACTTTTACGCC
CATCTTTATTTTTAGATATGGAGGTGCCGTCCAGATCAGAGGGTCGAGCATTTAATGCAGACGCGCCTTTTGTACCGTCG
AGTCCGATGGAGATATTTTTGGCCGCCGTGCTGTGTCTTATTAGCGTGATAGTGGTCGCTTACACGATGGTTGTGCTTTA
CCGTTGCATTTGCTCTAGAAATTACGCGGAGTGGCGGGCGAGCTGGCACCAGCAGGAAAAAACGCACGATTCCGTTACTC
AGTTAGTGCTGGAGGCGGTGCCCTTGGTTTTGGAAGGACACAGTCAAGAAGTCGAGTGCATCGCGACCGACAGTAATACC
ATCGCTAGCACGTGTCTAGCCGGACACATCAGGATATGGGACTCGACATCCGGCGAGCAACTCGCACATATCGACAGACG
ACAATTCTTTAGCAGCCCGCAGAAAAACTTGAATTCGACGTCGATGGACACCGATGAATTGATGTCAGATTATGAAAGTG
GCTCTCCACCTTCCAGGGGGGAAATGGAAGCCGCACAATCGCTGGGATTTTACTCGCCGGCCTCTGCGACACATCAGGGA
AGATTATCTCACACATACAATATGCAAAGGGCTACTAGTTACAATAATAATAACACTCACAAACGACGATCTATGGGAAA
CGCATTAGATTATGATTATCAAATCAACGAGCTCGGCAGTGACAATAAGCAGAAGCTGTTTCGTCGCAGCTTGGACAGCG
CTTACGATCTGCCAGATTTGAAACCGGAGATCAATATGAAATTCTCCTCCATAAAATATACGCCCTCGCAAAAGAATTAC
GATCAAGGTTTCGACTTTGGCGAGCGATATAAAACCTTAATGGAGCAACACAACAAATCGATCGAGGAGATGCAAAAATC
AGAAACTAGAGATAACGTCCCTCCTGGAAGATTAAACAACTTAGGCAGCACATCCTCTATAAATACTGATCGCACGATAC
AGACATCGCACGGAATATCAGCGATTTGGTGTATGGATTATCAGGAAAATCTCATAGTAGTAGGATGCGCTAATGGTAGT
CTAGAATTCTGGGAGGGTACAACAGGTAGATTTAAGTGTCTCTTTGATGACGGATCGGGACTTGGAATTTCGGCCGTTAG
ACTCGTTGGTAGCAGAGTAGTGGCGGCTAAATTGAATGGAACTGTCGACTTCTTACAACTCGAGAGTGAAGGCCAGCAGA
TTGATTGCCGTTTCACGTCTTACAGAAGAACACACGTGCGAACGGGAAGTGCTGGTTCACCCATGGACCTAAATAATAGT
ATGCAAACGGAGGAAGACTTGCGTTGCATGAAAATTGGCTGTCACAGAGCGCATCAACAAGCGATCACCGTCTTGGATAG
CGAAGGTGGACGCGTACTAACGGGAAGTCAAGATCACACCTTGAAAGTGTACAGGCTAGAAGATCAACTGCCTTTGTACA
CGCTTCACGGGCATTGCGGCCCGATATCGTGCCTATTTATCGACAGAATAAGTCCCAACACATCTGGCAGTGGGTCTCAA
GATGGATTGCTATGCGTGTGGGATCTTCTAACAGGAGCATGCATGTATAGCATTCAAGCCCACGATGGTGCTGTAGCCGC
TATCACTTGTGCGGTATCTATTGGAACGGACGAGAAACTATGTGTCTGGGAACGTTTTCAAGGACACTTGTTACACACTT
TACCGGCACATAAAGCTGCTTACAGTTTACAATTAGTGATGTTAACGCATCACCTCCTCATAACCAGTAATCAGGGATCA
TTAGTAGTGTGGGACGTAAGAATGGGCGAACCCGTGCGAGAAGTGAGATTGGGTCATAATGATAGTTGCATTTTCGTTAA
GCAAATGCTGGCACTGAGGGACAGTGTCGTTTGCGACTACGGCCGACAATTGAGAATAGTCAGATTTCCACTGGTCTCTG
ATAAATTGGACTAAGTTCTTTGTATGCGCGTGTACATACATACTCGAAAGAGTGCATAAGTTCACATTCTCTGACCATCC
GTACCATAGAATGTACAGCTTTCGTACA
PEP:
>LH20036-PA
MSRSLPDRVAGLYYAHGLLCSSHPIILLSVAISGYPLLNLPMPGNAPKTIINNTVIPVNGTETSVLYVQQVVLRVGVMPW
SEDLTLMDAFRGPLYEVFNLLEIIQNYQHPETLKTLGQVCLHIEAVKKRNGKKPEVLPEYNCLVLSPANLWQQSLELFSQ
DTNLINTIFSYQRGKISLAEIMFGMSLKETGVKRYPARIRQRILQYAVTIYLREYDHEFIKGLQHRLRTFYHLHQNVDNI
TNVDTHDEMLNIFYPGEFNYSEFFPLMMTFLALFFYEYFQVRKIELVKSKIGIAFSAAVTVMGSLSMTMGLCFFFGWTVN
MSAKVFPYLVIIFGLENVQVLTKSVVSTPAHLDVKIRVAQALSKEGWSITKNLLMEMTILTVGLFTFVYAIQEFCIFAIV
GLMTDFFLQMVFFSPILAIDIRRTELSNENSKFHISHIPTLRRQQFTTTITNRKPHIFRSKSHPRLNGLSAGPTNVIAPN
TQNTHTLGKIPKRLRLVHFWARTRIFQRAFMVGMVVWISVTINNSGIIEHVIHLSETLKPESDIDGYTIDKPQLLSNYVE
LNTVTPISVSSATIVPDNLNEQDLTNNATEELNKLKPVDFPPWNSLSLYHWSSILSMYNVSIAGGRVTILPTIKLSHAVS
PQVAIQISNPNDVQHFQWQILATAALDPLDFSGLFIKICQKLVVRYISHRLLRPSLFLDMEVPSRSEGRAFNADAPFVPS
SPMEIFLAAVLCLISVIVVAYTMVVLYRCICSRNYAEWRASWHQQEKTHDSVTQLVLEAVPLVLEGHSQEVECIATDSNT
IASTCLAGHIRIWDSTSGEQLAHIDRRQFFSSPQKNLNSTSMDTDELMSDYESGSPPSRGEMEAAQSLGFYSPASATHQG
RLSHTYNMQRATSYNNNNTHKRRSMGNALDYDYQINELGSDNKQKLFRRSLDSAYDLPDLKPEINMKFSSIKYTPSQKNY
DQGFDFGERYKTLMEQHNKSIEEMQKSETRDNVPPGRLNNLGSTSSINTDRTIQTSHGISAIWCMDYQENLIVVGCANGS
LEFWEGTTGRFKCLFDDGSGLGISAVRLVGSRVVAAKLNGTVDFLQLESEGQQIDCRFTSYRRTHVRTGSAGSPMDLNNS
MQTEEDLRCMKIGCHRAHQQAITVLDSEGGRVLTGSQDHTLKVYRLEDQLPLYTLHGHCGPISCLFIDRISPNTSGSGSQ
DGLLCVWDLLTGACMYSIQAHDGAVAAITCAVSIGTDEKLCVWERFQGHLLHTLPAHKAAYSLQLVMLTHHLLITSNQGS
LVVWDVRMGEPVREVRLGHNDSCIFVKQMLALRDSVVCDYGRQLRIVRFPLVSDKLD
Swiss-ProtSterol regulatory element-binding protein cleavage-activating protein
SUPERFAMILYSSF82866  Multidrug efflux transporter AcrB transmembrane domain superfamily     
Gene3DG3DSA:2.130.10.10     
PfamPF00400  WD40; WD domain, G-beta repeat     
SMARTSM00320     
ProSiteProfilesPS50156  SSD; Sterol-sensing domain (SSD) profile.     
ProSitePatternsPS00678  WD_REPEATS_1; Trp-Asp (WD) repeats signature.     

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