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Gene detail [Fasta]

Species Linepithema humile
GeneLH20030
Positionscf7180001004985:149169..154911[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH20030
sequence mRNA: 
>LH20030-RA
TCGGCATCGGCCACGTCCTAACTTCATGGCAGGTCTTGCTTATTTAGATCTGTTAATGCAGTGTCAATAATTTCGTGGTA
ACAGTATTCGGATACAGTGGATAATTGTGAAACAGTAACAACATGCCTTTGAGGTTAGATATCAAGCGGAAGCTAACAGC
TAGATCAGACAGAGTGAAAAGTGTAGATCTTCATCCAACATTACCATGGATGTTATGTTCTTTATACCAAGGCAACGTCA
ATATTTGGAATCATGAAACACAAACGTTGGTCAAGACATTTGAAGTATGTGATCTGCCCGTAAGAACAGCGAAGTTTGTA
CCACGCAAAAACTGGGTGATCACTGGTTCTGATGACATGCAAATTAGAGTATTTAACTACAATACTTCGGAACGCGTTCA
TGCCTATGAAGCACACAGTGATTATGTCAGATGTATAGCGGTGCATCCAACACAACCATTCATACTTACCAGCAGTGATG
ACATGTGGATTAAATTGTGGAACTGGGAGAAGTCCTGGATCTGCCAACAAGTATTCGAGGGTCACACCCACTACGTCATG
CAGATTGTATTCAATCCCAAGGACAACAACACTTTTGCCAGTGCATCTCTGGATAGAACCGTCAAAGTATGGCAACTTGG
TTCGTCTACAGCTAATTTTACACTGGAAGGTCACGAGAAGGGTGTCAACTGTGTGGATTATTATCATGGTGGGGATAAGC
CGTATTTGATATCAGGCGCTGATGACAGATATGTTAAAATATGGGATTATCAGAATAAGACTTGCGTGCAAACCCTGGAG
GGTCATACTCAGAATATCTCTGCCGTGTGTTTCCATCCGGAATTACCAATTGTTCTCACTGCCTCAGAAGACGGCACTGT
CAGAATATGGCACGCTGGAACGTACAGGTTGGAGTCTTCTCTCAATTACAGCTTCGAGAGAGTGTGGACGATTGCATGTA
TGCGAGGCTCGAACAACGTCGCCATCGGCTACGACGAAGGTAGCGTTATGGTGAAAGTCGGTAGAGAGGAACCTGCCGTC
TCGATGGATTCGCTAGGCGGGAAGATCGTGTGGGCGCGTCACAGCGAAATTCAGCAAGTGAACTTGAAAGCGTTGGGTGA
GGAAGCTCAGGATGGCGAGCGGCTGCCGTTGGCCGTCAAGGACATGGGCGCCTGTGAGATTTATCCGCAAACGATACAAC
ACAATCCGAACGGGCGATTTCTGGTGGTCTGCGGCGATGGGGAATACATCATATACACATCCATGGCGTTGAGGAACAAG
GCGTTTGGCCAGGCGTCTGAATTTGTGTGGGCGGCAGACTCGAGCCAATACGCAGTGAGAGAGAGTAATACGACGGTGAA
GGTATTCAAAAATTTCAAGGAAAAGAAAAGCTTCAAGCCAGATTTCGGAGCGGATGGTATCTTTGGTGGATTTTTACTTG
GCGTATCGTCCGGATCTGGCCTCTCCTTTTTCGATTGGGATTCGTTAAGATTGATTCGTCGCATAGACATACAGCCCACG
CATGTTTATTGGGCTGAGAACGCCTCGTTAGTGGCATTAGCAACATCAGATCAATATTTTATACTGAAGTATCATTCGGA
CGCTGTCGCTAATGCTGCAGAAAATGCTGAGGATATTGAAAATGCTTTCGAGATGGTAGCAGAGATGAACGAAGTAGTAA
AAACCGGTTTATGGGTCGGCGACTGTTTCATCTACACTAACAGCGTCAACCGTATTAATTACTTCGTTGGCGGCGAAGTG
GTTACAGTTTCGCATCTGGACAGACCGATGTACTTGTTGGGATACGTACCGAGAGATAACAGATTGTATCTATGCGATAA
GGAACTGTCTGTCGTCTCGTATTCTCTCTTGCTCTCCGTGCTAGAGTATCAAACCGCAGTTATGCGGAAAGATTTCGAAA
CTGCCAACAGAGTATTACCGACTGTCCCGAAGGAACATCGAACGAGAGTGGCTCACTTCTTAGAAAAACAGGGCTTCAAA
GAGCAAGCGCTGGCGGTATCAACGGATCCTGAGCATAGATTCGAACTAGCACTCGCGCTGGGAAATCTGATAACCGCACA
CACGCTAGCCAAGGAAGCAAACAGCCAACAGAAGTGGCGGCAGTTGGCTTCTCTCGCCACGCAGAAAGGCAAACTTTGTC
TGGCGCAGGAGTGCTTGCATCAGGCCCAAGATTTCGGTGGCCTGTTGTTGTTAGCCACCAGCACAGGAAACGCGGATATG
ATAGAGAAGCTCGGCACGATCGCGGACGAAACGGGGAAGAACAATATTTCCTTCTTGTCGAATTTCATACTAGGTGACAT
CGATAAATGCCTGGACATCTTAATCAAGACGGACAGAATTCCTGAGGCGGCGTTCTTTGCCAGGACATACGCGCCCAGTA
AAATCTCGCATATCATCAAATTGTGGAAAGAGAAACTTTCGGCGGTGAGCGAGAAGGCCGGACAAAGCTTGGCGGATCCC
GAGCAATACGAGAATCTTTTCCCGGGCTACAGAGAAGCCCTAAAGGTGGAAAAGTTCTTGCGAGATGAGAGCAAGAGGAA
GATTCCGGCTTCTGCATTTCCCACTGTTACGTCTAATGTCGAGCGGAAACCAATAGAAGAAATGCTGGTTGCCGAGCAGT
CGGGTACGTTTCAATATAAGGGCGGCATAAGCAGCACTTCTGAGGCCGAGACAAAACTGCCTGAAACACCACTCGACAAT
TACACTCAAAGATTGCAAGATATTTCAATATCTGCAAAAGATAGCGTCCTTAAAGCAAGTGCAGCGACTATTCCCACCGA
GAAAGCGACGACAAAGCCCGCAAGTAGTTCCAGGCCTCTTACAATAGACGACGACGACGACTTGGACATTGATCTAGATA
TCGACGAGAACATTGATACATCAGGTGTGAATCTTGACGATGACCTCCTCGAAGAAGATTAACCGTCGTAACAGGAGATG
AATGGCGTATGCACGACGTGCAAGTATCTCTCGTTCTCCTTCCGTCAATCATTCCCCGCAAAAAGAAAAGCAAATGACAA
GTTATAATAGAACCGAGTATTAAAATTATGAAACTTTTCTGTGCGCAAGTGTGTTTATATCACTACATTACCGAAGGTAG
TACAGCGCGTATCTGCCGGCTGCCGTCGGCGATTAAAGATTAAATATATTGTTAATATAACAGGAAGTATAATGT
PEP: 
>LH20030-PA
MPLRLDIKRKLTARSDRVKSVDLHPTLPWMLCSLYQGNVNIWNHETQTLVKTFEVCDLPVRTAKFVPRKNWVITGSDDMQ
IRVFNYNTSERVHAYEAHSDYVRCIAVHPTQPFILTSSDDMWIKLWNWEKSWICQQVFEGHTHYVMQIVFNPKDNNTFAS
ASLDRTVKVWQLGSSTANFTLEGHEKGVNCVDYYHGGDKPYLISGADDRYVKIWDYQNKTCVQTLEGHTQNISAVCFHPE
LPIVLTASEDGTVRIWHAGTYRLESSLNYSFERVWTIACMRGSNNVAIGYDEGSVMVKVGREEPAVSMDSLGGKIVWARH
SEIQQVNLKALGEEAQDGERLPLAVKDMGACEIYPQTIQHNPNGRFLVVCGDGEYIIYTSMALRNKAFGQASEFVWAADS
SQYAVRESNTTVKVFKNFKEKKSFKPDFGADGIFGGFLLGVSSGSGLSFFDWDSLRLIRRIDIQPTHVYWAENASLVALA
TSDQYFILKYHSDAVANAAENAEDIENAFEMVAEMNEVVKTGLWVGDCFIYTNSVNRINYFVGGEVVTVSHLDRPMYLLG
YVPRDNRLYLCDKELSVVSYSLLLSVLEYQTAVMRKDFETANRVLPTVPKEHRTRVAHFLEKQGFKEQALAVSTDPEHRF
ELALALGNLITAHTLAKEANSQQKWRQLASLATQKGKLCLAQECLHQAQDFGGLLLLATSTGNADMIEKLGTIADETGKN
NISFLSNFILGDIDKCLDILIKTDRIPEAAFFARTYAPSKISHIIKLWKEKLSAVSEKAGQSLADPEQYENLFPGYREAL
KVEKFLRDESKRKIPASAFPTVTSNVERKPIEEMLVAEQSGTFQYKGGISSTSEAETKLPETPLDNYTQRLQDISISAKD
SVLKASAATIPTEKATTKPASSSRPLTIDDDDDLDIDLDIDENIDTSGVNLDDDLLEED
Swiss-ProtCoatomer subunit beta'
KEGG     K17302     
SUPERFAMILYSSF50978  WD40 repeat-like superfamily     
Gene3DG3DSA:2.130.10.10     
PfamPF04053  Coatomer_WDAD; Coatomer WD associated region      
SMARTSM00320     
ProSiteProfilesPS50294  WD_REPEATS_REGION; Trp-Asp (WD) repeats circular profile.     
PRINTSPR00320     
PIRSFPIRSF005567     
OrthologiGroup-00421    Coatomer subunit beta'      

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