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Gene detail [Fasta]

Species Linepithema humile
GeneLH23952
Positionscf7180001005069:886009..889709[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH23952
sequence mRNA:
>LH23952-RA
ATGTCCAACAATCCTCAGTGGAAAACGTTCCAGCCGCCAATCATGAACTCTGACCCAGCAATACTTGACTATAAGTCTAT
GGCTATACCAAGTCCTAAAGCCATAACGGGATCTCATCAGCCAACGACTAATAATTACCGAAATGGTACAAATTACAGCG
GTGATCACTATATGGGTTCACCTCCGGGATGTAATAAAAATTCTACTACTAATTATGGAAGTTATCCTGGCGCACAATCG
TCACCACGCAATGGCGCCACGAGATATCCATTCGAATTCACATCCATGGAAACAAATGCTGGTTACACTAATGAACCTGC
CACTAATAACTCTACCTACCAGGATCAGTCTGCGAATCAAGGAACACGAGAAACTGGAATAATCGAAAAGTTACTGCATT
CTTATGGATTCATACAGTGTTGTGAAAGGCAGGCAAGACTGTTTTTTCATTTTAGCCAATTTAGTGGTACAATTGAGCAT
TTGAAGATTGGAGATCCAGTGGAATTTGAAATGACTTACGATCGGCGAACAGGCAAGCCTATCGCAAGTACTGTTAGCAA
GATCGCTCCAGTGGCATTGGGTGATCAACGATGCATCGGTAATGTAACAACAGAATTACAAGCAAGTGGTGATTCACAAG
GACGTATCAGTTATGAAAATCGAGGGGAATGTTTTTTTTTGCCATATACCAAAGATGATGTTGAAGGAAACGTCACTTTG
CGCGCTGGTGATAAAGTATCATTTCAAATTGCTACGAATCAACGAGGAAATTTGGGTGCGTGTAACGTAAGGCTGGAAAA
TCCAGCTCATCCAGTACGTTATCGCGGAGTGGTATGCTCAATGAAAGAAAATTTCGGTTTTATCGAGCGTGCCGATGTAG
TCAAAGAGATATTCTTCCACTTTAGCGAGGCTAAGTCTATGAAAGAAGAGCTTAGGCTAGGAGATGATGTGGAGTTTATA
ATACAGACACGCAACAAAATAAGATCGGATGCTTTGCTGTTGCAGGGAAAGGAAGTAGCTTGCAACATTACAAAGTTACC
ACCTGGCTCAATTGTATTTGAGGAAGTCAGTAACGAAGTGGTAAAGGGGCAAGTGTTGAAACCTTTGGAGAGAGGTACTG
CTGCTCGTCATCAGAGTGATCCATTACCTGGGCGTATTCGTTACAGGGATAGTGATCATTCTGAAGTTGAAGTACCTTTT
GGAGATAAAGATCAGAAAGGAGATTTTACTCTCAGGCATGGAGACTGGGTTCAATTTCGTATCGCAACGGATACACGAGA
TCAACTTAAAAGAGCAACAGAGATAATGTTACTACCAGAATCTTTCACTGTATCTGGAGAAAAACGAGAGCAAGGTACTA
TACATTCTCTCAAAGATGGATTTGGCTTTATTCGTTGCGTAGAACGAGAACCCAGAGTTTTCTTTCACTTTAACGAAGTT
CTTGATGTTGAAAGAGAAATTAGTGTAGGGGATGAAATTGAATTTACAGTCATACAAATTGCCCTAAACAATTTACCAAA
AGTGGATGATAAGGTAATGTTCAATATTGTTCAAGTGAAGCGAAATAAAGAATTTGTTGCTGAAGAAGTATATTTAGTAA
ACGCTGCTGGTGAAAAAATCCAAAATGTTAACAAAAAATCAAACGGACAAGTTTGTCAAGGTTTTATTGCTGCCCTTAAA
GACGGATTTGGCTTTATCGAGACAGTAAATCATGATAAAGAAATATTTTTTCACTACAGTAATTTTGAAGGAGACGCTAG
TACATTGGAATTAGGGGCCGATATCGAATGTACAATTAGTAGTTCGGGTAACGGGAGAGGCTCCGGAGGTTGCATAGCTG
CCGATCATGTTAAATTAGTACCTCGCGGCAGTATTCCCAGGCCAACAGCGGTCAGCGAAGTGCTCGATGGTACTGTCGTG
CGACCATTACGAAGCGCGAACCCCGAGCAGACTGAGTATGCTGGTTTGATCAAGATTAATCCAACTAACGAAGACGAGGA
GACGCCGGAATATGAATTTGGAATTATGGGGCTTTCTAACAAACGGGAGTTGTTACAAGCCGGCGATCCTGTGCAGTTAC
AGGTTGATTCGGCAGGTCATGCTTGTAACATCGTAGCTGTTAGGAAAAAAAGAAGAGCAACTGTGGATGCGGTAAAAGGT
CCCTTCGGCTTTCTCGCCTATGAAGTAGACGAGGGTAAAAAGTTGTTCTTCCACATAAGCGAAGTTCGTGATCACGCTAC
GTTGCAGCCGGGAGATCAGGTGGAATTCGTCTTGGTCACAAATCAACGCACCGGCAAGTCATCCGCGTGCAACGTAACTC
GATTAAGCGATGCGGTCCAGCAACGACCGGAACGCTTAATAAGCCGTTTGCGTACCATATCATTGGAAGAATCAGGCCCA
AAATTAACTGTGGTTAGGCAACCAAAAGGGCCCGATGGTACGCGCGGATTCAACCAGGAAAGATGCCAGCGTGCTCCTGG
TGCCATAGAAGAGTAATACGCCATGAATGGGGTTATTGATTATCCAAATTGTAATCTATAATTATTTGTTTTTAATCCAT
ACACTTCGATACCGATTACTATTGTAAGCATCGTAAAAGTTTGCCAAATTCAGACTAATGTGACAACAATAATTATAATC
TGAAACTGGATGGTGATCGAAGACCGGAAGAATATAAAA
PEP:
>LH23952-PA
MSNNPQWKTFQPPIMNSDPAILDYKSMAIPSPKAITGSHQPTTNNYRNGTNYSGDHYMGSPPGCNKNSTTNYGSYPGAQS
SPRNGATRYPFEFTSMETNAGYTNEPATNNSTYQDQSANQGTRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGTIEH
LKIGDPVEFEMTYDRRTGKPIASTVSKIAPVALGDQRCIGNVTTELQASGDSQGRISYENRGECFFLPYTKDDVEGNVTL
RAGDKVSFQIATNQRGNLGACNVRLENPAHPVRYRGVVCSMKENFGFIERADVVKEIFFHFSEAKSMKEELRLGDDVEFI
IQTRNKIRSDALLLQGKEVACNITKLPPGSIVFEEVSNEVVKGQVLKPLERGTAARHQSDPLPGRIRYRDSDHSEVEVPF
GDKDQKGDFTLRHGDWVQFRIATDTRDQLKRATEIMLLPESFTVSGEKREQGTIHSLKDGFGFIRCVEREPRVFFHFNEV
LDVEREISVGDEIEFTVIQIALNNLPKVDDKVMFNIVQVKRNKEFVAEEVYLVNAAGEKIQNVNKKSNGQVCQGFIAALK
DGFGFIETVNHDKEIFFHYSNFEGDASTLELGADIECTISSSGNGRGSGGCIAADHVKLVPRGSIPRPTAVSEVLDGTVV
RPLRSANPEQTEYAGLIKINPTNEDEETPEYEFGIMGLSNKRELLQAGDPVQLQVDSAGHACNIVAVRKKRRATVDAVKG
PFGFLAYEVDEGKKLFFHISEVRDHATLQPGDQVEFVLVTNQRTGKSSACNVTRLSDAVQQRPERLISRLRTISLEESGP
KLTVVRQPKGPDGTRGFNQERCQRAPGAIEE
Swiss-ProtCold shock domain-containing protein E1
SUPERFAMILYSSF50249  Nucleic acid-binding proteins superfamily     
Gene3DG3DSA:2.40.50.140     
PfamPF12901  SUZ-C; SUZ-C motif     
SMARTSM00357     
ProSitePatternsPS00352  COLD_SHOCK; 'Cold-shock' domain signature.     
OrthologiGroup-00655    Cold shock domain-containing protein E1      

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