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Gene detail [Fasta]

Species Linepithema humile
GeneLH23920
Positionscf7180001005069:132943..138781[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH23920
sequence mRNA:
>LH23920-RA
ATGGCCAAGGGAAGCGGCAATCCGGCCGGCAAGCGACCGTCGTCGCGGAACGCGCAGCCCTACGACGCGAGCAACGTGAG
TAATCTGACCACGGCACGAGATCGTCGCGGCATGAGCGAGCCCACGATGGGCCGCGCGCCGTTCGCGCGCGACTTTGGGC
CCAAAATAGCACGACGCTTAAACCGACATCGAGCGCTGACTTCTCGCCACAAGATGTCCCGCATGCCCGCCCTTTCCCCA
AGACAAACTCCCCCTGCGCGATATCCACGGTGTCACGGTTATTCATTCGTAAAAAGAGTGGCAAATAAGGCAAAAGACCT
CATACCACAATCTTCCTGGATTAGTGGTTTCGGCAAGTGGTTTAATACCTCTCAAGGTAATGAAGATACATTAGAAAGTA
GAGAGAATACTGAAGAAACAGAACTGGAGGATGATGTGCAACAGCCTCCTCCTAGCAAACGATCATGTATTCGCATGGAT
GTGATTCATCCGCCCGGTACATTTTCTATACAATCAAGAGTTAAAACTACATTAAAAACAGTTGATTCTTCTAAAGAGCA
ATATCCTGTTCACAATGAAGTGTTGCAACTTAAAGTACCAGGGAGGACAAATGTTGAAGTTAAATCACCTAACTCAACAG
TTGATTCATCGGGCATGAGTCAAACTGCCAAAAAAATATTGGAAGCATTAGAACATTTCTCTTCGCCTATAACCGACGCA
AAGAAAATTCCATTGAAGAACACAAATAATATCGTTTCCTCGACAGTGAGCAGGAAGCGAACACGAGCGCAGGTTCTAGA
AGATGGGTTGGACAGAACCAACCCATCTGCTAGAATTGGCTTGCGTCATTTGACACGTGAATTGACAGTACCAACTGTTC
CCGATATATTGAAGCTAAAAAGACGACAGAAGTTACAAGATACAACTCTTGCGGCTAGAAGGATTGTTTCAGCGCGCAGT
GATCCGCCTCCATCTCCGCAAGAATATCGACTGAGGACGGAGGACAACGACGGTGAAAAATATCGCGGCAAACTAAAGGG
TAAATCGAAAATAAATCTCGAGCAAGAAGAAACAGTGGCGCTTGTAAATTTGCCGAACATACCCCTGCCAATAACAACGT
TACCCAATTTCAATTTCACGATACCACCTCCCGCTTCACACGTTGCGGGCAAAACCACAGCGAATAAAGAAAACACCTTC
ACATTTGCTAGCCCAATTAAAGTGACGGATTCTGGAAAAAATTTGCAGCCTGTTAACAATTTCACTTTTAGTAATCCAAT
TAACGCTGAAGATAACGTAATTAATATGATTGACTCGAATTCACCTTCGAAGACAGAAAATACGGAATCTACTGCGCCTG
CCGCAACCATGTTTATGCCGAATTTTATTTGGTCCGGCTCGTCTACAGCACCTAGATTAAAAACAAAGATAAAAAATAGC
AAGGATGAGTTTGTAGGATGTGAGGAGACATTTAAACTGAAATCAGGAAGTGTCATGGATATTTTGTGTCCCAAATCTGA
CAAAATGGAATTTGATTTGGTCGAACAATCAAACTCGGGATTAGTATCTGAAAAATCATCTACGGATAAGATTGCCAGCA
CGTTTGTTATCTCAGATATCAAAAGCACACGTGATGCCGAGTCATCTTGGGAATGTAGTAAATGTCTGATTAGAAACAGC
AATGCAGATGAGCAATGTACCGCGTGTAAAATTGTCCGGTCGAATTCGAATGATAAAACTTCATCGCCGTCAACGTCAAC
GACAGAAACCGTAAAATCGAAACCACTCGCAAACGATTGCTTCGGTTCTCAATTTAAATTATCCAAAGATCAATGGGAAT
GTACGACATGCTGTGTAAGGAACAAGCAGAGTGATGCCAAATGTGTAGCGTGCTCCACACCGAAACGTCAACTGAGGACG
GAGGACAGCGACGGTGAAAAATATCACGGCAAATTAAAGGGTAAATCGAAGATAAATCTGGAGCAAGAAGAAACAGCGAC
ACTTGTAAATTTACCGAACATACCTCTGCCAATAACAACGTTACCCAGTTTCAATTTCGGGATACCACCTCCCGCTTCAC
ACACTGCGGGCAAAATTGCCGCAAATAAAGAAAACACCTTCTCATTTGCTAGCCCAATTAAGGTGACAGATTCTGGAAAA
AATTTGCAGTCTGATGACTATGAACCTCTTAATAACCCGATTAACACTGAAGACAACGTGAATATGATTGATTCAAACTC
ACCTTCGAAGACAGAAAATACGGAATCTACTGCGCCCGCTGCGACCATGTTTATGCCGAATTTTATTTGGTCCGGCTCGT
CGACAGCACCTAGATTAAAAGCAAAGGTAAAAAATAGCAAGGATGAATCTGAGGAGGCATCGAAACTGAAGTCGGGAAGT
GTCATGGATATTTTGAGTCCCAAATCTAACAAGATGGATTCTAATTTCGTCGAGCAATCAAACTCGGCTTCTGAAAGATC
ATCTACGGATAAGATTGCCAGCACTTTTATTAGCTCAGACACACGTGATGCCGAGTCATCTTGGGAGTGTAGTGAATGTC
TGATCAGGAACAGCAATGCGGATGAACAATGTACCGCGTGTAAAATTGTCCGGTCGAATCCCAATGATAAAACTTCATTG
CCGTCAACGTCAACGACGGAAACCGTCGTAAAATCCAAACCAGTCGCAAACGATTGCTTCGGTTCTCAATTTAAACTATC
CAAAGATCAATGGGAATGTACGACTTGCTGTGTAAGAAACAAGCAGAGTGATGCCAAATGCGTAGCGTGCTCTACACCGA
AACCCGGAAGTAGTTCTGCGACGCCGCAAAATATCAAGTTCCAAAACTCCGATTTAATGGACAAGTTTAAACCTGCCGAA
GGATCGTGGGAATGTTCCGGTTGCTTGTTACGAAACGCTGCGAACGTACTTACGTGTCCTTGCTGTAACGCATCTAAACC
CACTTCTCTAAAAACGAATCTGAAGAAGACGGATTTTGCCACGGAATCATCCGCGCAAAAGTTAAGCACTGGTACGAAAG
ACACGACGATTCAAGAAACAATGCCACCTTTTATTTTTGGAATACCGAAACAGGAAACGAAATTACCCGGATTCAATTCA
TCCGCGCAAACACCTGCGGTGAATCCTGTACCAGCGTTTGGTACACCGTCTAACAGTGCTACCCCGCTCTTTGGATCATC
CAGCACACCCGCTTTTGGAAACACTACTGTACCCGCTTTCGGCGATACCGCAACGACGCCCGCCATATTCACGTTCGGTT
CGACATCATCGCAGCAACCGTCAAGCGGCGGATTTAACTTCTCTGCGGACACCGATCCACCTGCATCGTCTGCGAAGCCG
CAAGCTATCAAGTCCCAAAACACCGATTTAATGGAGAAGTTTAAACCTGCCGAAGGATCGTGGGAATGTTCCGGCTGCAT
GCTGCGAAACGCTGCGAACATACTTGCGTGTCCTTGTTGTGACACGGTCAAACCCACTTCTCTAAAAACGAACCCGAAGA
AGACAGATTTTGCCACGGAATCATCCGCGCAAAAGTTAAACACTGCTGGTACAAAAGGCACGACGATGCAAGCAACAATG
CCGCCTTTGATTTTCGGATCGTCAAAGCAGGAAACGAAATTGCCCGAATTTAATTCATCCGCGCAAACACCCGCGGTGAA
TCCTATACCAACGTTTGGCGCACCATCCAACAGCGCTACTCCGTCGCTCTTCGGATCATCCAGCACACCCGCCTTTGGAA
ACACTACTACACCCGTTTTCGGTGATACCGCAGCGACGCCCGCCATATTCACGTTCGGTTCGACATCATCGCAGCAACCG
TCAAGCGGCGGATTTAACTTCTCCGCGAACACCAATCCACCAGCATCGTCTGCGAAGCCGTTCTTCACTTTTGGTAGTAA
TTCAAGCACGCCGCAAAGTAATAACAATATGTTCGGTTCATTCGGGGCTAACACTGCTGCGACTAACGCACCTAATTTTG
CGTTCAACCCACCGAAACAAGAGGCACCGACGGCATTCGGTCAGGATGCAACGACACCTCCGATGTTTGGCGCATCGCAA
ACAAATCCACAGACTCAGGCAACATCATCGTTCTCGTCTACTGCTTCGTCCAGTACAGGATTTAATTTTGGATCTACAGC
TCCACCTGCTGCAACCTCAGGTGGTTTTAACTTTGGAGAAATGTCATCTACATCAACGCCAACCGGTGGATTTAATTTCA
ATCCTCCTACTACCGCTCCCGCGGTAGCTTTTGATCCCAACAGCCGACCTTCGTTCAATTTCACCAAGGGAAATGTACCA
GCAGCATTCAAGTAA
PEP:
>LH23920-PA
MAKGSGNPAGKRPSSRNAQPYDASNVSNLTTARDRRGMSEPTMGRAPFARDFGPKIARRLNRHRALTSRHKMSRMPALSP
RQTPPARYPRCHGYSFVKRVANKAKDLIPQSSWISGFGKWFNTSQGNEDTLESRENTEETELEDDVQQPPPSKRSCIRMD
VIHPPGTFSIQSRVKTTLKTVDSSKEQYPVHNEVLQLKVPGRTNVEVKSPNSTVDSSGMSQTAKKILEALEHFSSPITDA
KKIPLKNTNNIVSSTVSRKRTRAQVLEDGLDRTNPSARIGLRHLTRELTVPTVPDILKLKRRQKLQDTTLAARRIVSARS
DPPPSPQEYRLRTEDNDGEKYRGKLKGKSKINLEQEETVALVNLPNIPLPITTLPNFNFTIPPPASHVAGKTTANKENTF
TFASPIKVTDSGKNLQPVNNFTFSNPINAEDNVINMIDSNSPSKTENTESTAPAATMFMPNFIWSGSSTAPRLKTKIKNS
KDEFVGCEETFKLKSGSVMDILCPKSDKMEFDLVEQSNSGLVSEKSSTDKIASTFVISDIKSTRDAESSWECSKCLIRNS
NADEQCTACKIVRSNSNDKTSSPSTSTTETVKSKPLANDCFGSQFKLSKDQWECTTCCVRNKQSDAKCVACSTPKRQLRT
EDSDGEKYHGKLKGKSKINLEQEETATLVNLPNIPLPITTLPSFNFGIPPPASHTAGKIAANKENTFSFASPIKVTDSGK
NLQSDDYEPLNNPINTEDNVNMIDSNSPSKTENTESTAPAATMFMPNFIWSGSSTAPRLKAKVKNSKDESEEASKLKSGS
VMDILSPKSNKMDSNFVEQSNSASERSSTDKIASTFISSDTRDAESSWECSECLIRNSNADEQCTACKIVRSNPNDKTSL
PSTSTTETVVKSKPVANDCFGSQFKLSKDQWECTTCCVRNKQSDAKCVACSTPKPGSSSATPQNIKFQNSDLMDKFKPAE
GSWECSGCLLRNAANVLTCPCCNASKPTSLKTNLKKTDFATESSAQKLSTGTKDTTIQETMPPFIFGIPKQETKLPGFNS
SAQTPAVNPVPAFGTPSNSATPLFGSSSTPAFGNTTVPAFGDTATTPAIFTFGSTSSQQPSSGGFNFSADTDPPASSAKP
QAIKSQNTDLMEKFKPAEGSWECSGCMLRNAANILACPCCDTVKPTSLKTNPKKTDFATESSAQKLNTAGTKGTTMQATM
PPLIFGSSKQETKLPEFNSSAQTPAVNPIPTFGAPSNSATPSLFGSSSTPAFGNTTTPVFGDTAATPAIFTFGSTSSQQP
SSGGFNFSANTNPPASSAKPFFTFGSNSSTPQSNNNMFGSFGANTAATNAPNFAFNPPKQEAPTAFGQDATTPPMFGASQ
TNPQTQATSSFSSTASSSTGFNFGSTAPPAATSGGFNFGEMSSTSTPTGGFNFNPPTTAPAVAFDPNSRPSFNFTKGNVP
AAFK
Swiss-ProtNuclear pore complex protein Nup153
KEGG     K14296  NUP153; nuclear pore complex protein Nup153     
SUPERFAMILYSSF90209  Ran binding protein zinc finger-like superfamily     
PfamPF00641  zf-RanBP; Zn-finger in Ran binding protein and others     
SMARTSM00547     
ProSiteProfilesPS50199  ZF_RANBP2_2; Zinc finger RanBP2 type profile.     
ProSitePatternsPS01358  ZF_RANBP2_1; Zinc finger RanBP2-type signature.     
OrthologiGroup-00172    Nuclear pore complex protein Nup153      

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