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Gene detail [Fasta]

Species Linepithema humile
GeneLH13927
Positionscf7180001004726:20979..28775[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH13927
sequence mRNA: 
>LH13927-RA
ATGTCTGAGACAGCGAAAATGACGTACACTTGCATAATTGATCTGGAAAAGAAGGCTAAGATTAATTTTGTGGGGAAGGA
GCCGCGCAGTGTATATGCGAGACTTCCTGATATGAAACTGAAATCTGAAACAGCGAAGAAACAAGGGGATGATGAAACTG
CCTACATTATGTTAAAGAGATGGTTGAACACAGTTCTCTGGCTAAAGAGAACTCCGGATTCGAAGGAAGGCAAATCAATC
TATACTGCGAAAATAACTCTTGATCAGATAAATGAAGTGAAAAACATACTTGCAGACTTAACGCAAAAGCTAGAGATACG
CTATGAGCGTAATTCCAAAAAACATTTAGATACAGTGGAAAAAATGGAAGTGGAGATGGATAAGGCAGATACAACAGAGA
CTTATGCATCAAGTACTGATATTGGCTTAAAATTACCAGAAACACCAACTGATGATCCTTTGTATGTACAGAAAAGAGAT
AGCAAATATTTGATCATTGATATTAGGGAGAAGGTTTATTACGATAATTCCAGGATAATATCTGACAAGTGTATTAACAT
TCCGCAATCTGAAATTCAACCAGGATTATTGGCCTTTCATTTTTTAAAATATTTACGTAAAGATAAGCATTCGACTGATT
TGTTTAATCATCGATCGAGTCAGTATGTGGACATTGTGATTTTGCTGGATTGGCACACTACGCAAGAGTCTCTGACGGCC
GCCAGTAGCTTAAATAAATTGAAGGATATTTTAGAGAACTGGGATCCTGGTACAAATTATAAAAAGATTAAAATTCTCAA
TGGAGGATATCAAGAATGGCTGATAAGATATCCGCCAATCACGACAAATTCCAATGTGAACATACCAGAGTTTAACAATG
TCGAAAACGAAATTTTAGTTGATCAAAAAATTGATTATCCAGAACTGATAGATTCGGATGAGGAAGAGATTTTTGAGAAA
GTGCAAAATACAAATTCGAAGAAATTGAATAACACGAGAACATTTAATAACATGGACGTCGAGATGGATCATGGCAATAA
CAAGTCAACAGCATCCAAGCATACTAGGTCGATTGATTATCCAGAACTGATGGATTCGGATGAGGAAGAGATTTTTGAGA
AAGTGCAAAATACAAATTCGAAAAAATTGAATAACACGAGAACATTAAATAACATGGACGTCGAGATGGATCATGGTGAT
AACAAGTCAACAGCATCCAAGCATACTAGGTCGAACAGTAATGATATTATTTCTTCAGCCAAGAGCTTTACTAGTCACGT
AACGATATCAATCGATGGCAAACGATCGTCTCGAAACGATATTACAAATACGCAACGATTTGAGAACTCAGACGTGTCAG
TATCTCAGCATAAGATATCATCGAGTAAGATGCCGCAAAACGAGGTGAGCACAAAGCCGGTTATCGATCGCAGCAGTAAA
CCGCCGACTTTAAAAACGTCTGATCCACGATGTAAGGAAGTATTGAAGTTTATGAAAGAATTAAACGAACTAGCGAAATC
GAAGACTAAGCTGGCTGATGAATTGTTCAATCAGGAATTTGAGCTTTATTCGCAGCGCGATGATAAATACAGTGCCAGCG
ATAAAAAGTATCTACGTGGGGAGATAAAATCTTTAAAAGTTAAATTGGAAGACATGCACAAAATGTATCTCAAAGTGGAA
AATGAATATAACACCTATTGTAAGGAAACAGACGCGATTAAATTTAATACCACTGACGATAACGAAAAGAAGAATTTTGA
ATTCAATCTTTCTATGTTGAAAAAGCAGCTCAAGGACATTGAAACCAAACGAAAAAAATTACACGAAATGATGGAAGGAG
ATGAAAAGCTGGGTGTTAGTAGCTTAGAATTCATGGAAAGAGAACACAAGGAAATAACGATGAAGCAAAATGATGGGGAT
GTTCACAAGGAGCCCTTAAAAACGGACGGTTCGTCGATTAACACCGGCTTGGAGCGCTCTTATTCAAGTCCAAACTTGCT
GCAGTTGGGAGAACGTAAAGCACCTCAGATAGATAGAACTTCTAAGCCGCATATATCGCCTCGCAATCAGAATGGATCTA
TTGGGAACCAAAACATCAAAGTGTCTCCTCTTAGTTGGGGAAATCGGGAAGAACGAATGACTCCTATTCACGGCAGTGTT
GTAAGTACTTATCCGGACAAGATTGTACGCGGGTGCTTCCCAGTAAAATTGCCAATATACGGCCTTAGAGACGCTATCGC
AGCTTTCGCTTTCGCGGCATTTTGGAGTGTAAAGATAGCCCCCTTGTACTTGCAGCATCCGGGCATAACCGGCCTGAAGA
ATTTGGGCAATTCTTGTTACATGAATAGCATTATTCAGTGCTTGAGCAACACGACAAATTTAGCGAAATACTTCACCGAT
AACTCGTACGCCGATGATCTCAATACGAGTAACGATAATATGACACAAGGCCAAGTCGTGGAAGAAGTGGCTCAAGTAAT
TAAAGCGTTATGGAGAGGCCAGTACAAAAGCATATCCCCTCACGACCTAAAGGTACCTTTAATCAATTGCGTTTTTATTT
CGCCCATTTTTTTTGTGTGTTCAAAGAGTGCAGCTTATTTGCTTTTCCTAGTTGCAGTAGGACAATACAAATTGCAGTTT
GTAGGTTACGAGCAACAAGATTCTCACGAATTTCTCACATTCCTCTTAGACTGGATGCATAATGATCTTAAGAAAGAGGC
AAAGATGCCGTTCGAAATGACCAACGCGGAAAAAGAATGGGACAAAGCAATGAATTCTCAACGATCCATAATATCTGACT
TGTTTTTCGGTCAACTGAGATCCACCATCACATGTTCATTTTGCAAACAAGCGAGCACTACATATGAGACATTTAACAGC
TTAACGATGTCTCTTTCTCAATCCAATCGATGTACTTTAAATGACTGCATGGACAAATTTGTGACAGGGCAGAAGGTAAG
CGGATGGAAATGTCCCAAGTGCCAGACACCACGCGACGCGATGAAAAAGTTCGACTTCGTCAAGCTCGCGCCCATCGTCG
TGATTCATTTGAATCGTTTCGCCGAAAGTGGCGGATGGTTAGAGAAGCGCAACACCGCCGTTGATTTTCCCTTCACGGGA
TTCAATTTGAAGCCCTACCTCGTCGCGGAGACTAAGAAGGCGAATATGACGAATAATATTCGCAATTACAATTATACTCT
TTACGCAATGTCCAATCACTTTGGAACGATGGATGGCGGTCACTACACGGCATTTTGTAAAAACGCTACTCAAAATAAAT
GGTACAAGTATGACGATCAGACTGTCACGGAAGTGTCGCCGAGCCTAGTGAAATCTCAAAATGCGAGTGCCTATTTATTA
TTCTATACATCGTTTCCGAATACGATAATGTAG
PEP: 
>LH13927-PA
MSETAKMTYTCIIDLEKKAKINFVGKEPRSVYARLPDMKLKSETAKKQGDDETAYIMLKRWLNTVLWLKRTPDSKEGKSI
YTAKITLDQINEVKNILADLTQKLEIRYERNSKKHLDTVEKMEVEMDKADTTETYASSTDIGLKLPETPTDDPLYVQKRD
SKYLIIDIREKVYYDNSRIISDKCINIPQSEIQPGLLAFHFLKYLRKDKHSTDLFNHRSSQYVDIVILLDWHTTQESLTA
ASSLNKLKDILENWDPGTNYKKIKILNGGYQEWLIRYPPITTNSNVNIPEFNNVENEILVDQKIDYPELIDSDEEEIFEK
VQNTNSKKLNNTRTFNNMDVEMDHGNNKSTASKHTRSIDYPELMDSDEEEIFEKVQNTNSKKLNNTRTLNNMDVEMDHGD
NKSTASKHTRSNSNDIISSAKSFTSHVTISIDGKRSSRNDITNTQRFENSDVSVSQHKISSSKMPQNEVSTKPVIDRSSK
PPTLKTSDPRCKEVLKFMKELNELAKSKTKLADELFNQEFELYSQRDDKYSASDKKYLRGEIKSLKVKLEDMHKMYLKVE
NEYNTYCKETDAIKFNTTDDNEKKNFEFNLSMLKKQLKDIETKRKKLHEMMEGDEKLGVSSLEFMEREHKEITMKQNDGD
VHKEPLKTDGSSINTGLERSYSSPNLLQLGERKAPQIDRTSKPHISPRNQNGSIGNQNIKVSPLSWGNREERMTPIHGSV
VSTYPDKIVRGCFPVKLPIYGLRDAIAAFAFAAFWSVKIAPLYLQHPGITGLKNLGNSCYMNSIIQCLSNTTNLAKYFTD
NSYADDLNTSNDNMTQGQVVEEVAQVIKALWRGQYKSISPHDLKVPLINCVFISPIFFVCSKSAAYLLFLVAVGQYKLQF
VGYEQQDSHEFLTFLLDWMHNDLKKEAKMPFEMTNAEKEWDKAMNSQRSIISDLFFGQLRSTITCSFCKQASTTYETFNS
LTMSLSQSNRCTLNDCMDKFVTGQKVSGWKCPKCQTPRDAMKKFDFVKLAPIVVIHLNRFAESGGWLEKRNTAVDFPFTG
FNLKPYLVAETKKANMTNNIRNYNYTLYAMSNHFGTMDGGHYTAFCKNATQNKWYKYDDQTVTEVSPSLVKSQNASAYLL
FYTSFPNTIM
Swiss-ProtUbiquitin carboxyl-terminal hydrolase 8
KEGG     K11839  USP8, UBP5; ubiquitin carboxyl-terminal hydrolase 8 [EC:3.4.19.12]     
SUPERFAMILYSSF54001  Cysteine proteinases superfamily     
Gene3DG3DSA:3.40.250.10     
PfamPF00443  UCH; Ubiquitin carboxyl-terminal hydrolase     
ProSiteProfilesPS50235  USP_3; Ubiquitin specific protease (USP) domain profile.     
CoilsCoil
ProSitePatternsPS00972  USP_1; Ubiquitin specific protease (USP) domain signature 1.     

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