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Gene detail [Fasta]

Species Linepithema humile
GeneLH24313
Positionscf7180001005077:5305..10582[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH24313
sequence mRNA:
>LH24313-RA
ATGTTGATCTGGGTTTTTTTATTATTTCTGGTCTGTGGAGATGGCCAGTTTACTTCAGAAATAACGGAGTCGACTCCTAG
ACTTCCATGGAATCGTTACGATGATCAGGATCAGAATATAGGAGGTTTTGGATTTCGAAATCCAGGACAAAATGATAATG
TTATAATTAAGGAATCCACGTACTTTATAGTTGCATCTCGCATGGTTCGACCAGGTCAGGTGTATCGAGTTGCTGTGAAC
ATTCTACAGAGTTTGTTACCTATGACAGTGCGTACATCTATTCAACGCAATGGTGTGGAAATTGCAGCAGATTTTCAAGA
AGTAAAAGAAGGCATACCGGAAACTTTAATGATGCGCATGCCATCGACTTCTGTGGGTGGTCACTATAAACTACGAATAG
AGGGATTGTATAACAATCTTGAGGGTGGCCAAGCGTTCTTGAATGAGACTAATTTGATATTCTCGCAACGTTCCATGACT
ATTTTTATACAATTAGACAAACCTGTGTATATGCAGGGTGATACAGTGCGATTTAGAACGATCCCGATAGACACAGAATT
GAAGGCTTACAACAACCCTGTGGATATATACATGTTGGATCCGAACAGAAGAATTATGAGAAGATGGCTCAGCAGACAAA
GTAATCTAGGCACAGTATCGCTGTCGTATCAACTGTCCAACCAACCGCTTTTTGGAGAATGGATCGTGCAAGTAATAGCG
CAGAATCAAGTGGAGGAGAAGAAATTCCTGGTGGAAGAGTATTATCAAACACGTTTTGAGGTTAATGTCACAATGCCAGC
GTTTTTCTTTAACAACGATCCTTATATTTATGGCATCGTCCAGGCGAATTACACCTCGGGTGCACCGGTGAAGGGTAATC
TGACTCTGAAAGCCATCTTCAAGCCGCTGGAAAGAGGATATAATCCTAACGTGGCGATCGAGCCGATAGAAAGATTTTTC
GATTTCAACGAAATTTATCCATCGTGGTTTAAACCTCTCAACTGGTTCAGCAGAGAGCCGGTGCTGAGGTTCTTCAACGG
AACTTATCACTTCCAATACTCTATGCACGAATTATTCAACTTTGCTCCGTCCATGGAGGCGATGGAGGTCACCGTGGTCG
CAACGGTAGGTGAGAGATTTCTGGACGAAGTGGTCGTCGGCTATTCCACAGCGAGAATTTTCAACTCCACTACGAAGATT
CGTTTCCTCGGTGGCAGTCCGCAGGTATTCAAGCCAGGAATGCCATTCACGCTAAATTTGGTCGCATCCTTCCACGACAA
CTCGCCGCTGCGACCCAGGCAGCTCCGAGACGCACTCCTGGAGATTCACGCGGAGGTTGATATGCGAGCTGGCGGACGTC
GTAACATCGATATTCAGCGTCCGTTGCACTCACCGGAGCGCAAAGACGTGTGGACCGTAAAGATGGATCTCAGAAAACAG
TTCAAATTGGAGAATAACGATATCGCAAATCAGGTGTTGAACGACGTCGCTTCTATGAAGCTCACCGCTTATTTTATCGA
TGGCGAGGGTCACAGGACGCAGACCGAACTGCTGTTGCTTGCTCACGAGTCTCCGAATATGAAACACATTAAGGTATCAA
CGTCCACGGAGAAGGCCAAGGTTGGCGAATACATGGTATTCCATGTGCAAACCAATTTCTATATTGAAACCTTTAACTAC
ATTATCATGGCCAAGGGTATAATACTCCTGGCTGGAGAGGAACACATGCAGAACAGCATAAGAACCTTCGCGATACCTCT
GAGTCCCGAGATGGCTCCAGTTGCAACGGCAGTAGTGTACTACGTTGGTCGTTACGGCGACGTCGTGGCGGACTCGCTGA
CGTTCCCGGTGAACGGCATCTCGCGTAACAATTTCACCGTGTTCATCAACAACATGAAGTCGAGAACGAACAAGCGCGTC
GAGGTGGCCATTTATGGCGAGCCCGGTGCTTACGTCGCTCTGTCGGGCATCGATCGATCGTTCTACACAATGCAGGCGGG
TAACGAGTTATCGTACGCAAACGTGATTACGAAGATGGCGCATTTCGATGAGGAGACCAACGGCACGCACTCGCACACTT
GGCAGTATCACGACGGCGATCCGGATGAGATTGTGTACTTCCCGTCGTCGACCTTCGGCATCGACGTCAATCGCACGTTC
GATTACATCGGCCTAGTCGTCTTCACAGACGCCGTGATACATCGACGGTCCGAACTCTGCAATCGCACACAGGGATACGG
CGAGTGTCTAACCGGTCGGTGCTACCGGATGGAGAAAAGATGCGACGGTGTGTTCGACTGCGAGGACGGGACGGACGAGA
CGCGATGCACTGAACGAAATGCGACCGACATCGCGCAATTCCGCAAGTGGCGTTTCAACCGGATCCAGCGGCACTACGAG
AACGTCTGGCTGTGGAAGGACATCAATATCGGCCCGCACGGTCGGCAGATCTTCAACATAGACGTGCCGCGAAGACCGGT
CCACTGGATGGTCACTGCGTTCAGTGTGTCGCCCAGCATCGGCTTCGGCATGTTGCCGAGGGCGCTCGATTATACTGCGA
TTCTACCATTCTATATCAACGTGGAGATGCCGACTCACAGCAAGCAAGGCGAACAGATCGGCATTCGCGTGTCTGTCTTC
AACTATATGCGCTACGACATTGAGGCAACAGTGGTGCTGACTGACTCCAAAGACTACAAATTCGTCCACGTCGAGGATAA
CGGCATCGTGCAATCGTATTCGCCGCGCACCTCCTTCGGCGAACACCAGTTCTTTATTTGGATCCGTTCCCAGGACGTTA
GCATCGTTTATTTGCCTATTGTGCCAGTGAAACTCGGCGACATCAAGATCCACATCTACGCGAACACTCTCATCGGCAAA
GACTCCGTGACGCGCATTCTGCACGTCGAGTCTGACGGGTTGCCGCAGCACCGGCACGAATCGCTCCTACTGGATCTCAG
CACGCGTTCCTACGTGGTCCGGTACTTGCATGTAAACATCACTGAGACGCCGATCATACCGTACGACGAGAATCGTTACT
ACGTATTCGGATCCAACAAGGCAACTCTCAGCTTAGTTGGCGATGTGGTGGGACCGAACTTCCCGACGATGCCGGTGAAC
GCGACAAGTCTTATAAACCTGCCGATGGACTGCGCCGAGCAAAACATGTTCAGCTTTGCCGCGAACATGTACAACACTCT
GTTTATGCGTCAGATCAATCAGCGTAATCGCACGCAAGAGAGGGAGAGTTTCTACTATATGAACATCGGCTATCAGCGGC
AGTTGTCGTTCATGAACCCAGACGGATCCTTCAGCTTCTTCCGTACCGATTGGAACCAGTCGTCGCCGAGCGTTTGGTTG
ACGGCATTCTGCGCGCGAATTTTCCAAGAAGCCAGCTTCTACGAATGGGAAAACTATCTATACATCGATCCTGAGGTTAT
CGCACAGGCAGTTTCCTGGATATTGAAACATCAGACGCCGGAAGGCTCATTCTACGAGGTGACCTGGCTGCCGAATCGAA
AGATGAACAGCTCGTTGAACTACGAATATGACACGGTCGCCAATCGAAACATTAGTCTCACCGCTCACGTACTCATCACG
TTGGCGAGCGTTAAAGATCTCACCGGCGGCCTGGGTTCTGAGGTAGCTCTGAGCGCGGCCAGCGCTATCAAATGGCTGGA
AAGAAACATGAGACTACTGGAGGAGCGCGGCAAGCCCTACGAAGTAGCGATAGTGGCGTATGCGCTCTTAGTAGCGAAAG
CCTCAACTGCCGAGCAAGCCTTTAGCATTCTGCAGAAACACTTGCAGAAAGAGGGTGAATATTTATACTGGGGTAGAGAA
AAGGTGGGGCTACCCCCGGAGAAAATCGAGAATCAGAAGCCTTTCCGGTTACCGCGTTTACCCTACAAGTACGACTCGGA
AAACATAGAGGCAACCGCATATGGACTGCTCGTGTACGTCGCCCGGCAGGAAGTTGATACAGTGCCGATAGTGAAGTGGC
TAAACGCGCAGAGATTAACGCATGGCGGATGGGCGACCACTCAGGATACCGTTTGGGCGATGACAGCGCTGATGGACCAC
ACCGTGAAAACGAGGATCAGAGACGTCAGTGAGCTCGAAGTCACGATAGAAGCTACCTCTTTGCCGGAACAGAGAAAGAG
ACTGTTTGTAAACAACAAGAATCTAGCGAAGCTTCAAACTATTGAGATACCAGAAGCATGGGGAACAGTGAAAGTTCAGG
CAAAAGGCGCGGGCTACGCCATTCTGCAGATGCATGTGCAGTATAATGTGGACGTAAAGAAATTCCAAACGCAGCCACCT
GTACAAGCTTTCGATCTGTACACCAGAGCGAATTTCCACGGCAGAAATCAGTCTCATATCTCGTATCTTAGTTGTCAAAG
ATGGACGAATATCGAAGAATCTTCGCGTTCCGGTATGGCTGTGTTGGATGTAGCCATACCGACCGGCTACATAATTCAGC
AGCAAAATCTGGATAAGTACATCTTGTCGAAACAAGTAAGGAATCTCCAGAGAGCGCGTTTCTTGGAGAGAAAAGTGCTC
TTCTACTTCGATTATCTCGATAGCGAAGAGACGTGCGTAAACTTCACCGTGGAACGTTGGTATCCAGTCGCGAATATGTC
GCGATATCTCCCCATTCGCGTTTACGATTACTATGCGCCAGAACGATTCAACGAATCTATATTTGACGCACTGCCTACGT
ACACCTTAAATATATGCGAGGTTTGCGGTAGCTCGCAATGTCCCTACTGCCCAATTTACAATGCCGCCACGCTTTTAGCC
ACGCCGGCAGGTTTCCTGCTTATCGCGTCGCTTGTCGTCACGATAACAAGGTATTTCCGAACGCAACAATTCAACGACGG
CTAA
PEP:
>LH24313-PA
MLIWVFLLFLVCGDGQFTSEITESTPRLPWNRYDDQDQNIGGFGFRNPGQNDNVIIKESTYFIVASRMVRPGQVYRVAVN
ILQSLLPMTVRTSIQRNGVEIAADFQEVKEGIPETLMMRMPSTSVGGHYKLRIEGLYNNLEGGQAFLNETNLIFSQRSMT
IFIQLDKPVYMQGDTVRFRTIPIDTELKAYNNPVDIYMLDPNRRIMRRWLSRQSNLGTVSLSYQLSNQPLFGEWIVQVIA
QNQVEEKKFLVEEYYQTRFEVNVTMPAFFFNNDPYIYGIVQANYTSGAPVKGNLTLKAIFKPLERGYNPNVAIEPIERFF
DFNEIYPSWFKPLNWFSREPVLRFFNGTYHFQYSMHELFNFAPSMEAMEVTVVATVGERFLDEVVVGYSTARIFNSTTKI
RFLGGSPQVFKPGMPFTLNLVASFHDNSPLRPRQLRDALLEIHAEVDMRAGGRRNIDIQRPLHSPERKDVWTVKMDLRKQ
FKLENNDIANQVLNDVASMKLTAYFIDGEGHRTQTELLLLAHESPNMKHIKVSTSTEKAKVGEYMVFHVQTNFYIETFNY
IIMAKGIILLAGEEHMQNSIRTFAIPLSPEMAPVATAVVYYVGRYGDVVADSLTFPVNGISRNNFTVFINNMKSRTNKRV
EVAIYGEPGAYVALSGIDRSFYTMQAGNELSYANVITKMAHFDEETNGTHSHTWQYHDGDPDEIVYFPSSTFGIDVNRTF
DYIGLVVFTDAVIHRRSELCNRTQGYGECLTGRCYRMEKRCDGVFDCEDGTDETRCTERNATDIAQFRKWRFNRIQRHYE
NVWLWKDINIGPHGRQIFNIDVPRRPVHWMVTAFSVSPSIGFGMLPRALDYTAILPFYINVEMPTHSKQGEQIGIRVSVF
NYMRYDIEATVVLTDSKDYKFVHVEDNGIVQSYSPRTSFGEHQFFIWIRSQDVSIVYLPIVPVKLGDIKIHIYANTLIGK
DSVTRILHVESDGLPQHRHESLLLDLSTRSYVVRYLHVNITETPIIPYDENRYYVFGSNKATLSLVGDVVGPNFPTMPVN
ATSLINLPMDCAEQNMFSFAANMYNTLFMRQINQRNRTQERESFYYMNIGYQRQLSFMNPDGSFSFFRTDWNQSSPSVWL
TAFCARIFQEASFYEWENYLYIDPEVIAQAVSWILKHQTPEGSFYEVTWLPNRKMNSSLNYEYDTVANRNISLTAHVLIT
LASVKDLTGGLGSEVALSAASAIKWLERNMRLLEERGKPYEVAIVAYALLVAKASTAEQAFSILQKHLQKEGEYLYWGRE
KVGLPPEKIENQKPFRLPRLPYKYDSENIEATAYGLLVYVARQEVDTVPIVKWLNAQRLTHGGWATTQDTVWAMTALMDH
TVKTRIRDVSELEVTIEATSLPEQRKRLFVNNKNLAKLQTIEIPEAWGTVKVQAKGAGYAILQMHVQYNVDVKKFQTQPP
VQAFDLYTRANFHGRNQSHISYLSCQRWTNIEESSRSGMAVLDVAIPTGYIIQQQNLDKYILSKQVRNLQRARFLERKVL
FYFDYLDSEETCVNFTVERWYPVANMSRYLPIRVYDYYAPERFNESIFDALPTYTLNICEVCGSSQCPYCPIYNAATLLA
TPAGFLLIASLVVTITRYFRTQQFNDG
Swiss-ProtCD109 antigen
SUPERFAMILYSSF48239  Terpenoid cyclases/Protein prenyltransferases superfamily     
Gene3DG3DSA:2.60.40.690     
PfamPF01835  A2M_N; MG2 domain     
SMARTSM00192     
ProSiteProfilesPS50068  LDLRA_2; LDL-receptor class A (LDLRA) domain profile.     
OrthologiGroup-00802    CD109 antigen      

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