Warning! We strongly recommend Internet Explorer (9.0 and later) and Google Chrome for better display.

Gene detail [Fasta]

Species Linepithema humile
GeneLH13096
Positionscf7180001004659:1874472..1879314[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH13096
sequence mRNA:
>LH13096-RA
ATGTCCAGAATAATGACTTGTTTATTAAGTACTGTGGTGTTTTCACTCATTCTTTTATTCCCTGCACTTGCACAACATGC
CTTTTATCAACAGACTTATTATAAGTGTCCCCAACATTGGAAACAATTTCAAGATTCATGCTATCGTTTTGTCAAGAGCC
CACTGAGACAACGAGAAGATGCACGAAAAAACTGCCAAGCATTTCAGAGTGATTTGCTTTCTATTCACTCACTGGAAGAG
TACAGATTTGTGCTCTACGAGTTGATTTACCAAGATCCACAACATCGTAGATGGCTCACAGGAGTGAGGCTCATCAATGG
CATATGGATAAATGAGGCTGACGGTACATCCATGCAAAATATGGATAATGCTTTTCTACCTGAACCTAATGACAATGTAT
TAGGAAGAGAATACTTAGCATATTCCTACTCTAATAGTCTTCAGCGTTGGGGATTAGAGAAAGTCACCAATAGAGAGGAG
CTTTTATACATTTGTAAAGGATCTATTTCCATTCTTTATTATTTGGTAGATGATGATCGATCTTTTCAATATGGTCACAA
TATTGATAATCCCCTTCAAATACCTAGAGGACCATACTTCATAGTGCAACCCAAGAAGAGAGTGTTTGATTCATCAAGAA
GAAAGACAAATAATGATATCTCATTGAGCTGTCTGGCAGGTGGATATCCTACCCCGACCTATGAATGGTACAAAGAAGAA
TATTTAAATGATCGGCTTGTTTCAATAAAAATAGATCCTATTAAAAACAGCAAGTATACTATAAGTGGTGGAACATTAAT
CATCTATGATCCAGCACAGAACAGAGATCATGGCATGTATCATTGCAAAGCAAAGAACAAATTTGGCACGATTTTATCTG
AGAGTGTTGAGCTGTTATTCGGATACATCCTAGAATTTAATTTGAAACGTTCTGAAGAACGCGGAGATATCCATTGGGGT
AAAACAATTTATTGCGATCCACCACAACATCAATCGGATGTAAAATATCTTTGGTCGCGCGATTGGGTCTTTCCTAATTT
CGTCGAGGAAAGTAAACGTGTATTTGTATCGTATGATGGAGCACTCTACTTCTCTGCATTGGAAAGCGTTGATGAAGGAA
ACTATTCATGCAGTCTTCAAAACGTCGCGTCTAATACTGGACGCAACGGACCATTTTTCTCGTTATGGGTGGACTCGAGC
ACTTCTTATCAGCAGTTGAAGTTTCCCAACAATTTTCCAAAGGCGTTTCCAGAATCACCAATAGCCGGCCGTGAAGTTAG
AATGGAATGTATCGCATTTGGATATCCTGTTCCATCGTACAATTGGACGAGGAGAGACGCTCCCTTGCCACGCGATGCAC
AAATAACAAGTGGGAATCGAGTGTTGATACTACGACAAGTACAAGTGGAGGATCAGGGCGAGTACATTTGCCGAGCGTTC
AACGATCGACTGTCAATACAGAACTCCGTGTATTTAACTATACGAGCAGAGCCTAATTTCACCATACCGTTGGTTGACAA
GCATATGGATAACAAGGCAGATCTAACTTGGACCTGTGAAGCGTTTGGCATACCAGACGTAACTTATTACTGGTTAAGAA
ATAGTGAAATCTTGAACGATACTTTACCGCACCAAGATAGAGATCGTTATACTATACAAGATAACGTACTAAATATAAAA
CGTTTGGATCCTGAAAGGGATCAGGCTATGTATCAGTGCTGTGCAAGGAATTCACTGAAGACGAGATGCTCATCAGCGCA
GCTTAGAATTTTATCGTTGAAACCTTCTTTTAAAAAACGGCCTATGGAATCTGAGACATATGCAGCTGAAGGAGGAAATG
TCACAATTGTATGCAAACCAGAGGCCGCGCCTAGACCGAAATTTATTTGGAAGAAAGACGGAAATGTGATTGGATCAGGC
GGTAGACGAAGAATTTTGGATACTGGAAACCTTATCATCAGTCCGGTATCACGAGACGATGAGGGAACATATGTGTGCAC
AGCGTCGAACGAGTACGGCAGCGATGAAAGTCGTGGACGACTCATTGTATTACGCGGAGCGGAATTTATCGAGAGATTGC
CGCCAAGGATAGTCATGTCTTACAATGACAATCAGACATTACGCTGCTTGAGCCACACAGACGAATTATTAGATGTGGCT
TATATCTGGACACACAACGGCATGTCTATCCGTGATGAAGACCTGAGATATAATCCGCGATGGAACATCAATAATGAATA
TCTGGATATTATAAACGCCACATATGCTGAAGCTGGCGAATATGAGTGCATTTTGAAAAGCGCTGTTGGCGAAATATCGA
GTAGAACGAATTTGATCATAGAAGGACCACCGGGCCCGCCTGGTGGTATACAGGTTTTCAACATTGAAAGGAATTCAGTT
ACATTACGCTGGATTGATGGCGCCTTTAATGGCAGAGAAATAACTAAGTATACAATCAGCGGACGCACAAATTACAATCG
CACGTGGTTTCCTATTGCAGAAAATATTACGGCCTATGAGGTGGATAGATACACCGGCCGAAAAGAAGCACGCATGGAGA
ACGTTTTGAATCCTTATTCCACATACGAGTTCCGCGTGCAGGCCTTTAACATATATGGTTACGGCCCGCCATCGACGTCC
TCCCCTCAATATCGCACTTCGACCGACCGGCCTACGAAAGCACCGTCCAATATTGGCGGTGGCGGAGGAAATATCGGAGA
CCTAATGATTACATGGAATCCTCTCAGCCAGTCCGATCAGAACGCTCCTGGAATACATTATAGGGTATTCTGGCGCCGCC
AAGGACTCAACGAATTCCAAACACAGACTCTGGAAAAGTTCGGGAATACTGGCAGATATTCCACAACAGTGGGTCGTGAT
AATTATTATATGAAATATGAAGTGAGAGTTCAGGCGATCAATGACATAGGCGAGGGTCCTATATCGGAAATAAAGGTTGT
GTACAGTGCCGAAGACATGCCGCAGGTCGCGCCGCAATTAGTATATGCGATGTCTTACAACAGCACTAGCTTGAATGTTA
CTTGGGCACCGATCGAGCAGACTCGCGAGCGAGTGCGAGGCAAACTTATAGGCCACAGGATCAAGTACTGGGTGAAAGAT
CACAGTCGTGAAGAGGATTCTACTTACTACTTATCGCGCTCCACGCGTAATTGGGCGCTGATCGTTGGATTGCAGCCGGA
TACATATTATTACGTAAAGGTAATGGCCTTCAATTCCGCCGGTGAAGGTCCGGAGAGTGAACGGTACATAGAGAGAACTT
ACCGCAAGGCGCCGCAGAAACCACCGTCCTCGGTGAACGTGTATGGTGTAAATCCATCGACGGTGCGAGTTACCTGGCGC
TACGTACAACCGAGTATGGATGAGGAGCCGCTGAAGGGATACAAAATACGCATATGGGAAGTCGATCAGGACATGAGCAC
GGCGGAAGACACGATCATACCGGGTGGTTCTAAACTGGAGGCCGATATCAGTAACTTAGCCCCGGGCAAGAGATACCATA
TGAGAGTGCTTGCGTTTAGCAATGGCGGTGATGGCCGGATGTCAAGCCCTACTCATACATTCCAAATGGGTGATACCGCA
GCTTTCAGAAGCAACGCCGAGAATAAAATTTTAGACGTTACTTTATTGATAACTTCCTTGTTGTTCTTGAGAGTTTTCGG
CTTTATATAG
PEP:
>LH13096-PA
MSRIMTCLLSTVVFSLILLFPALAQHAFYQQTYYKCPQHWKQFQDSCYRFVKSPLRQREDARKNCQAFQSDLLSIHSLEE
YRFVLYELIYQDPQHRRWLTGVRLINGIWINEADGTSMQNMDNAFLPEPNDNVLGREYLAYSYSNSLQRWGLEKVTNREE
LLYICKGSISILYYLVDDDRSFQYGHNIDNPLQIPRGPYFIVQPKKRVFDSSRRKTNNDISLSCLAGGYPTPTYEWYKEE
YLNDRLVSIKIDPIKNSKYTISGGTLIIYDPAQNRDHGMYHCKAKNKFGTILSESVELLFGYILEFNLKRSEERGDIHWG
KTIYCDPPQHQSDVKYLWSRDWVFPNFVEESKRVFVSYDGALYFSALESVDEGNYSCSLQNVASNTGRNGPFFSLWVDSS
TSYQQLKFPNNFPKAFPESPIAGREVRMECIAFGYPVPSYNWTRRDAPLPRDAQITSGNRVLILRQVQVEDQGEYICRAF
NDRLSIQNSVYLTIRAEPNFTIPLVDKHMDNKADLTWTCEAFGIPDVTYYWLRNSEILNDTLPHQDRDRYTIQDNVLNIK
RLDPERDQAMYQCCARNSLKTRCSSAQLRILSLKPSFKKRPMESETYAAEGGNVTIVCKPEAAPRPKFIWKKDGNVIGSG
GRRRILDTGNLIISPVSRDDEGTYVCTASNEYGSDESRGRLIVLRGAEFIERLPPRIVMSYNDNQTLRCLSHTDELLDVA
YIWTHNGMSIRDEDLRYNPRWNINNEYLDIINATYAEAGEYECILKSAVGEISSRTNLIIEGPPGPPGGIQVFNIERNSV
TLRWIDGAFNGREITKYTISGRTNYNRTWFPIAENITAYEVDRYTGRKEARMENVLNPYSTYEFRVQAFNIYGYGPPSTS
SPQYRTSTDRPTKAPSNIGGGGGNIGDLMITWNPLSQSDQNAPGIHYRVFWRRQGLNEFQTQTLEKFGNTGRYSTTVGRD
NYYMKYEVRVQAINDIGEGPISEIKVVYSAEDMPQVAPQLVYAMSYNSTSLNVTWAPIEQTRERVRGKLIGHRIKYWVKD
HSREEDSTYYLSRSTRNWALIVGLQPDTYYYVKVMAFNSAGEGPESERYIERTYRKAPQKPPSSVNVYGVNPSTVRVTWR
YVQPSMDEEPLKGYKIRIWEVDQDMSTAEDTIIPGGSKLEADISNLAPGKRYHMRVLAFSNGGDGRMSSPTHTFQMGDTA
AFRSNAENKILDVTLLITSLLFLRVFGFI
Swiss-ProtContactin
SUPERFAMILYSSF49265  Fibronectin type III superfamily     
Gene3DG3DSA:3.10.100.10     
PfamPF07679  I-set; Immunoglobulin I-set domain     
SMARTSM00409     
ProSiteProfilesPS50041  C_TYPE_LECTIN_2; C-type lectin domain profile.     
OrthologiGroup-00484    Contactin      

You might be interested in these researchers

You might be interested in these references