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Gene detail [Fasta]

Species Linepithema humile
GeneLH23079
Positionscf7180001005041:1240617..1248708[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH23079
sequence mRNA:
>LH23079-RA
ATGGCTACGTCTGACTCCAAAGCGCCTTTGCGGACGGTGAAACGCGTCCAATTCGGCATTCTTTCGCCGGATGAAATACG
TCGTATGTCAGTCACAGATGGCGGCATACGATTTCCAGAAACCATGGAAGGTGGCCGCCCTAAATTGGGCGGTCTCATGG
ATCCAAGACAAGGTGTTATTGACAGAAATTCCAGATGTCAAACATGCGCTGGTAATATGACAGAATGCCCTGGCCATTTT
GGTCATATAGATCTTGCAAAGCCAGTATTTCATGTTGGATTCATTACAAAGACCATCAAGATATTGAGATGTGAGTGTTT
CTACTGCTCTAAACTGCTTGTTGGCCCTCATAATCCAAAAATTAAAGAAATTGTCATGAAGACAAAGGGACAGCCGCGGA
AGCGACTTGCATTTGTTTATGATCTATGTAAAAGCAAGAACATTTGCGAAGGTGGAGATGAAATGGATATTAACAAAGAG
AATGCGGAAAGTCAGCCACAGATGGAAAGGAAACCTGGCCACGGAGGTTGTGGTAGATATCAACCTAATCTCAGACGATC
TGGGTTGGACGTCACTGCAGAATGGAAGCATGTGAATGAAGATACACAGGAGAAGAAGATAAATCTTTCAGCCGAGAGAG
CGTGGGAAATTCTCAAACACATCAAGGACGAGGAATCCTTCATCCTGGGCATGGATCCGAAATTTGCCCGACCAGATTGG
ATGATAGTTACTGTACTTCCCGTACCACCGTTGTCTGTCAGACCCGCAGTAATCATGTACGGCTCTGCCAAGAATCAGGA
TGACTTGACTCACAAACTAGCGGATATCATCAAGTCGAACAACGAATTGCTGCGAAACGAGCAGTCCGGTGCGGCAGCAC
ACGTGATCTTGGAGAACATAAAGATGCTGCAGTTTCACGTAGCGACGCTCGTCGACAACGACATGCCGGGTATGCCACGG
GCGATGCAAAAGTCGGGGAAACCACTCAAGGCGATCAAGGCCCGGCTGAAGGGAAAGGAGGGGAGAATTCGAGGAAACCT
GATGGGGAAACGTGTGGACTTCTCTGCGCGCACCGTCATCACACCAGATCCCAATTTGCGCATCGACCAAGTAGGCGTGC
CGCGCAGTATAGCGCAGAACTTGACATTCCCCGAAATTGTGACGCCTTTCAACATTGACAAAATGCAGATATTAGTCAGG
CGGGGCAATTCGCAGTATCCCGGCGCGAAGTACATCGTACGCGACAACGGTGAGAGGATTGATCTGCGCTTCCACCCCAA
GACATCGGATCTGCACTTGCAGTGCGGCTACAGAGTGGAACGGCACATCCGCGACGGCGATCTCGTGATCTTCAACCGTC
AGCCGACGCTGCACAAAATGAGTATGATGGGTCACCGCGTGAAGGTGTTACCCTGGAGCACATTCCGTATGAATCTGAGC
TGCACGTCGCCTTATAATGCCGACTTTGACGGCGACGAAATGAATCTACACGTGCCACAATCGATGGAGACTCGCGCGGA
GGTCGAAAACATTCACGTGACACCGCGCCAGATCATAACCCCGCAAGCGAACAAACCGGTCATGGGTATCGTGCAGGATA
CTTTAACAGCCGTGAGGAAGATGACGAAACGCGACGTTTTCATCGAGAAGGAGCAGATGATGAATCTGCTCATGTTTCTG
CCCAGCTGGGACGGCAAGATGCCGCAGCCGTGCATCCTGAAGCCGAAACCACTGTGGACCGGCAAGCAATTGTTCTCTCT
TATCATTCCGGGGAATGTGAACATGATACGGACGCACAGCACTCATCCAGACGAGGAGGACGACGGCCCGTACAAATGGA
TCTCGCCGGGCGACACCAAAGTAATGGTCGAGCACGGAGAGCTCGTGATGGGTATTCTCTGCAAGAAGACCCTGGGTACG
TCCGCCGGATCGTTGCTTCACATCTGTATGCTGGAGCTGGGCCACGAGGTATGCGGACGCTTCTACGGCAACATTCAAAC
TGTCATCAACAACTGGTTGCTGCTGGAGGGTCACTCAATCGGTATCGGCGACACTATTGCCGATCCACAGACATACTTGG
AAATCCAGAAGGCGATCAAGAAGGCCAAGGAGGACGTGATAGAGGTGATCCAGAAGGCGCACAATATGGAGCTGGAGCCT
ACTCCCGGTAACACGCTGCGTCAGACTTTCGAGAATCAAGTGAACAGAATCCTAAACGACGCTCGAGACAAAACCGGTGG
TTCCGCCAAGAAATCTCTTACTGAATACAACAACTTGAAGGCTATGGTGGTGTCGGGCTCGAAAGGCTCCAACATTAATA
TCTCACAGGTTATCGCTTGCGTGGGTCAACAAAACGTTGAAGGTAAACGAATACCCTTCGGTTTCCGCAAGAGGACCCTG
CCGCATTTCATAAAAGACGACTACGGACCCGAGTCTCGCGGTTTCGTCGAAAACTCGTACCTCGCCGGTCTCACGCCGTC
GGAGTTTTACTTTCACGCTATGGGCGGTCGTGAGGGTCTTATCGATACCGCCGTAAAGACGGCCGAGACCGGTTACATCC
AGCGTCGTCTGATAAAGGCTATGGAGTCGGTGATGGTGCACTACGACGGCACCGTGCGTAACTCCGTCGGCCAGTTGATC
CAGCTGCGCTACGGCGAGGACGGCCTCTGCGGTGAGACCGTGGAGTTTCAGAATCTGCCCACCATCAAGGTGAGCAACAA
GGCCTTCGAGAAGAAATTTAAGTTCGATCCAACCAACGAACGATACCTGCGACGCATATTCAACGAGGATATCGTCCGGG
AGATGATGGGTTCCGGCGAGGTGATCTCCGAGCTGGAGAGAGAGTGGGAACAGTTGAACAAGGATCGCGCCGTGCTCCGA
GAGATCTTCCCGAGCGGTGAGTCCAAGGTCGTGCTACCGTGCAATTTGCAGAGGATGATTTGGAACGTACAGAAGATTTT
CCACATCAACAAACGAGCGCCGACTGATCTTAGTCCCATGAGGGTGATCCAGGGCGTGAAGGACCTTCTGGATAAATGCA
TCATCGTCGCCGGAGATGACAGACTGAGCAAACAGGCGAACGAGAACGCAACTTTACTATTCCAGTGCTTGGTTCGATCT
ACTTTATGCACGAAATGCGTCTCCGAGGAGTTTAGGCTGTCCAGCGAAGCTTTTGAATGGTTGATTGGAGAAATTGAGAC
GCGATTCCAGCAGGCTCAGGTGTCACCCGGTGAAATGGTCGGCGCTTTGGCAGCGCAGTCTCTCGGCGAGCCCGCCACTC
AGATGACACTGAACACTTTCCACTTTGCCGGTGTGTCATCGAAGAACGTAACTCTCGGTGTGCCTCGATTGAAAGAAATC
ATTAATATTAGTAAAAAACCGAAAGCGCCGTCGCTCACGGTGTTCCTGACGGGCGCAGCCGCGCGAGACGCTGAGAAGGC
GAAGAATGTACTTTGCCGACTCGAGCACACGACGCTGAAGAAAGTGACGGCCAACACGGCGATTTATTACGATCCGGATC
CGCAAAATACAGTAATCTCGGAGGATCAGGAATTCGTCAACGTGTATTACGAGATGCCTGACTTCGACCCCACGAAAATC
TCGCCGTGGTTGCTGCGTATCGAGTTGGACAGAAAACGGATGACCGACAAGAAGCTGACGATGGAGCAAATCGCGGAGAA
AATCAACGCCGGCTTCGGCGATGATCTAAATTGCATATTCAACGACGACAACGCCGAGAAGCTGGTGCTGCGAATTAGGA
TAATGAACAGCGACGACAACAAGTTCCAGGAGACGGACGAGGAAACCGTAGATAAGATGGAAGATGACATGTTTTTACGA
TGCATCGAAGCGAACATGCTTAGTGACATGACTTTGCAGGGTATCGAAGCTATCGGCAAGGTTTATATGCATTTACCACA
AACAGACTCCAAGAAGCGCATTGTTATCACGGACACAGGCGAATTTAAGGCTATCGCGGAATGGCTTTTGGAAACAGACG
GGACGAGCTTGATGAAAGTATTGAGCGAGAGAGACGTGGATCCTGTAAGGACCTTCAGTAACGATATCTGCGAAATATTC
CAAGTGCTCGGCATCGAGGCTGTGCGGAAGTCCGTAGAAAAAGAAATGAATGCGGTGTTGCAGTTTTATGGTCTTTATGT
AAATTATCGACATCTTGCTTTACTGTGCGATGTTATGACGGCGAAGGGCCATCTCATGGCAATTACACGTCACGGAATTA
ACAGACAAGATACCGGAGCCCTTATGAGGTGCTCCTTTGAAGAAACAGTCGATGTCTTATTGGATGCTGCATCTCATGCA
GAGGTAGATCCAATGCGGGGAGTATCTGAAAACATTATTATGGGACAACTTCCGCGTATTGGGACAGGATGCTTCGATTT
ATTATTGGACGCGGAGAAATGCAAAGCTGGTATCGAGATTCCGATGGCGGTTGGCGCAGGTATGATGGGAACAGCAGGAA
TGTTCTTCGGCAGTGTAACTGGTATGTCAAGTATGAGTCCTCAGATGACTCCTTGGATGGGAGCTACTCCAGGTTACGGT
GCCTCAAGCATGTCACCCGCTTTGAGCAGTGGCATGACTCCAGGAGGTGCGTGTTTCTCGCCGTCGGGCGCGTCGGACGC
GTCGGGCTTATCGCCGGCATATTCTGCTTATTCACCGCAGCCGGGAAGCCCGGGTAGTCCGGGGCCCAGCATGAGCCCGT
TCCCGATGTCACCAGCAGGCGCAGCCTCACCTAGCTACTCACCGACATCGCCTGCGTATCTGCCCACGTCTCCCAGCATG
ACACCGTCGAGTCCGAACTACTCGCCCACGAGTCCGACTTACTCGCCGACCAGCCCGAACTATTCGCCGACGTCGCCAAG
CTACTCGCCGACAAGTCCGAGTTATTCACCGACGTCACCCAGTTACTCGCCGACAAGTCCGAGTTATTCACCGACGTCAC
CCAGTTACTCGCCGACCAGTCCCAGTTATTCGCCCACGTCGCCGAGTTACTCGCCGACTTCGCCGAGCTACTCGCCCACA
TCGCCAAGTTACTCACCGACTTCACCAAGCTATTCGCCAACCTCACCGAGTTATTCGCCGACATCACCAAGCTACTCGCC
GACATCACCAAGTTACTCACCGACAAGTCCAAGTTATTCTCCTACGTCGCCGAGTTACTCACCGACCTCGCCGAGCTACT
CGCCTAGTTCGCCCAACTATACACCCGCGTCGCCTTCATACTCACCTACTTCACCCAGTTACTCGCCGAGTTCACCGCAG
TATTCGCCCGCGAGTCCGAGTTACTCACCTAGCAGTCCAAAATATTCGCCGACAAGTCCGAGTTACTCGCCTACCTCGCC
GTCGTTCGCCGGCACGTCACCGCAATATACGCCCGCGAGTCCCACTTACTCGCCGACCAGTCCGACATATTCGCCCACAA
GTCCATCCTACTCGCCGAGCTCGCCACAGCACACGGCATCAGGCAGTACACGTTACTCGCCCAGCAGTCCGAATTATTCG
CCTACCAGTCCGACATATTCGCCCACGAGCCCGCAGTATTCACCGTCGAGCACCAAATATTCACCTACGAGTCCAACTTA
CACACCCACGAGTCCCAGCTACTCGCCGACAAGTCCAACGTACTCGCCGCCGGTGCCAGGATACTCACCCACGAGTCCTA
CGTACTCACCAGCGTCACCCGCTTACGAGACAGATGATTAA
PEP:
>LH23079-PA
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGNMTECPGHF
GHIDLAKPVFHVGFITKTIKILRCECFYCSKLLVGPHNPKIKEIVMKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKE
NAESQPQMERKPGHGGCGRYQPNLRRSGLDVTAEWKHVNEDTQEKKINLSAERAWEILKHIKDEESFILGMDPKFARPDW
MIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVILENIKMLQFHVATLVDNDMPGMPR
AMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQILVR
RGNSQYPGAKYIVRDNGERIDLRFHPKTSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLS
CTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFIEKEQMMNLLMFL
PSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGT
SAGSLLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEP
TPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTL
PHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLI
QLRYGEDGLCGETVEFQNLPTIKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAVLR
EIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDRLSKQANENATLLFQCLVRS
TLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI
INISKKPKAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTKI
SPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQETDEETVDKMEDDMFLR
CIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF
QVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGMMGTAGMFFGSVTGMSSMSPQMTPWMGATPGYG
ASSMSPALSSGMTPGGACFSPSGASDASGLSPAYSAYSPQPGSPGSPGPSMSPFPMSPAGAASPSYSPTSPAYLPTSPSM
TPSSPNYSPTSPTYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPASPSYSPTSPSYSPSSPQ
YSPASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYS
PTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
Swiss-ProtDNA-directed RNA polymerase II subunit RPB1
KEGG     K03006  RPB1, POLR2A; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]     
SUPERFAMILYSSF64484  beta and beta-prime subunits of DNA dependent RNA-polymerase superfamily     
Gene3DG3DSA:2.40.40.20     
PfamPF05001  RNA_pol_Rpb1_R; RNA polymerase Rpb1 C-terminal repeat      
SMARTSM00663     
PRINTSPR01217     
CoilsCoil
ProSitePatternsPS00115  RNA_POL_II_REPEAT; Eukaryotic RNA polymerase II heptapeptide repeat.     
OrthologiGroup-00947    DNA-directed RNA polymerase II subunit RPB1      

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