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Gene detail [Fasta]

Species Linepithema humile
GeneLH16490
Positionscf7180001004914:1307109..1317946[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH16490
sequence mRNA:
>LH16490-RA
ATGGCGTACAGCAGATTCACAAAATGGAGGATAGTGAAAACAGAATCAGAATCCGGTAAGGAATCCGGATCCGATTCTGA
AAATGAGAGTAAAAGCGATAGCTCTTCTTCCGGAAGCAACAGCGGCTCGGGATCGGGATCAGAAAGTGACTCCAGCTCCT
CGAGCGGTTCCGGTTCCGGATCAGGCTCTGATTCTGAAAAGTCAGAGAAGTCAGACGCACCTGCTGCACAGAATGATAGT
TTCCAGAGCAAAAGCTCGAATCACAGCACAGAAACAAAGCTTAGAGTTAAGCATGAGCCTACTCGCGAGTGGGACGAGAA
TCCTGACATATACGGCATCAGGAGATCCGGGCGTTCTAGGAAGGAGCCTGAGAGACTCGCCACGAATCGCGAGAGCGACA
GCGATAGTCGCAAGAAATTTAAGAAGAAAGGTTCACACAATTCGTGGAATTCAGAGAGTTCAGATTCAGAATCTGAAGAA
ACTGAAAATCGAAAGTCTCCACCTACTAAATCTCAGAACAGACGTGCGGCGCAGAAGACGAAAGAGAAAGCTAGAGCGAT
ACGGAAGAAACGTATCTCTGAATCTTCTGAAAATTCTTCCTTTGATAGCGATGACAATAGGAGGCAAGTCACCAGACGAA
CAGGCACAACAGTTAGCTATAAAGAGGAAAGTGAAGAAGGTACCGATAGCGATGATTTGGTTGAGGTTGAAGAATCGAAT
GCTCCGTCCGCAGAACCCGATAATGCGGAAAGTATTGAACAAGTTTTGGGGCAAAGAGTGGGCAAGAAAGGAGTTACCGG
CAACATAACGACAATCTATGCTGTCGAGGAAAATGGCGATCCTAATCCAGCGGATTTAAGTAATTTAGAAACTGAATTAC
AGTATTGGATAAAGTGGAAAGGCTGGTCTCACATACATAACACGTGGGAGTCGGAAGAGTCTTTGAAAACGCAGAAGGTG
AAAGGAATGAAAAAGTTAGAAAATTTTATTAAACGTGAGCGCAAAAGGGAGCAGGCGAGAGAATACGCTGAGCCGGAGGA
TATAGATTTCCTAGAGAGTCAACTGGAACTTACGCAAGAGCTTTTGAAAAGTTACAACAATGTCGAGAGGATTATTGCTG
ATTTTAAGAAACCAGATTCAGAGCATCCCGATTACTTCAGTAAATGGGAGAATCTGTCATACGCTGAGGCCACATGGGAA
GATGGAGCTTTAATAGAGAAAAAATGGCCGGAGAAGATAAAGGAATTTCGTGATAGGGAGGATTCCAAGAGGACACCGAG
CAAACATTGCAAAGTCCTTAAATCTAGACCCAAGTTCCATCAATTAAAAGCGCAACCAACTTACATGGGCTTGGAAAAAG
AATTAATATTGAGAGATTATCAAATGGACGGGCTCAATTGGATGATCCATTCCTGGTGCAAGGAAAATAGTGTTATATTA
GCCGACGAGATGGGTCTCGGCAAAACGATCCAAACGATATGCTTCCTTTACTATCTATTTCACGCGCAACAACTTCACGG
GCCATTTTTATTAGTAGTTCCTCTGTCGACAATGACTTCCTGGCAAAGAGAGCTATCTCTGTGGGGTCCTGAAATGAACG
TCGTCACGTACTTAGGCGACGTCAGCTCCCGTAATATTATTAGAGAATATGAATGGTGCTACCGAGATTCGAAAAGACTA
AAGTTTAACGCTATACTTACAACGTATGAGATAGTACTTAAAGACAAAGCATTTCTGGGTGCCTTAAATTGGGCAGTGCT
GCTAGTGGACGAAGCTCACCGACTGAAAAATGATGATTCCCTTCTGTACAAAGCGCTTACCGAGTTTCACACCAATCATC
GTTTGTTAATTACTGGTACCCCATTGCAAAACAGCTTGAAGGAGCTGTGGGCCTTATTGCACTTCATTATGCCTACGAAA
TTTGCCTCGTGGGAAGAATTCGAGAAGGAACATGACAATGCTGCGCAGAAAGGATACTCCAAGCTGCACAAGCAATTGGA
ACCGTTTATCCTGCGCAGAGTCAAAAAGGACGTCGAGAAATCCCTGCCCGCCAAAGTCGAGCAAATCCTGCGAGTAGAGA
TGACGTCCTTGCAGAAGCAGTACTACAAGTGGATATTAACCAAAAATTTCGAAGCGTTGCGAAAAGGCGTGAAGGGATCC
ACCATATCGTTTCTGAACATCGTGATCGAGTTGAAGAAATGCTGCAACCACGCTTTCCTCACGAAACCCATCGAGGCCGA
GGAAAGGAGCAACGAGGATTATCTACAGCAAATAATTCGCGGTTCCGGCAAATTGGTGCTCCTGGATAAATTACTGGTCA
GACTACGTGACACCGGGCATCGAGTATTGATATTCAGCCAAATGGTCCGGATGTTGGACATACTCGGCGAATACCTGCAA
AAGAGGCACTTCCCGTTCCAAAGATTAGACGGAAGCATAAAGGGAGAGCTGAGGAAACAGGCGTTGGACCATTTCAACGC
CGAAGGATCGCAGGACTTTTGCTTCCTGCTGTCGACGCGAGCCGGCGGGCTCGGCATTAATCTTGCCACCGCGGACACTG
TGATAATTTTCGATTCGGACTGGAATCCGCAAAATGATTTGCAAGCTCAAGCCAGGGCGCACCGAATAGGACAGAAGAAT
AAGGTCAATATCTACCGACTGGTTACGAAAAAATCGGTCGAGGAAGAGATCGTGGAACGCGCAAAGCAGAAAATGGTCCT
GGACCACTTGGTGATACAGCGAATGGACACAACTGGGCGGACAGTATTAGATAAGAAAAACGCGGGGACCAATAGTAATC
CGTTTAACAAGGAGGATTTGACTGCTATTTTGAAATTCGGCGCGGAAGATCTATTTAAAGACGAAGAAGGCGGAGACGAG
GAACCGCCTTGTGATATTGACGAGATACTTCGAAGAGCTGAAACAAGAGACGAAGCACCAACGACGGTGGGAGATGAACT
GTTGTCCGCATTTAAAGTCGCCAGTTTTAAAACTGCCTTTGACGAAGACCTGGAGTCCACTAATCAACCAAATGACAACG
ACGATGAAAGCAAAGACTGGGCGGAAATCATTCCGGAGAACTTCCGAAAGAAAGTGGAAGAAGAAGAGAAGTCGAAGGAA
ATGGAGGATCTCTATCTACCGCCGCGTAGCCGGAAAACTCTTCAGCAAATTAATCAGAGCGACGGAAAAAGCAAAAAGCG
TAGAAGAACGCAGGATGACAGCGACGAGGGTGAAGATTCGGGAAGCGAGGCGGAAGGCAGTGACGACGAAAGGCCCAAGA
AGAGAGGTAGACCAAGAGTCACGCCACGCGAGAACATCAAGAGTTTCACAGACATGGAGATCCGAAGGTTTATCAAGAGT
TACAAGAAGTTCCCGGCGCCTTGGAAACGATTGGACGATATCGCGACCGATGCGGACTTGCAAGAGAAGCCAATGTCAGA
ATTGCGTTTCCTGGTCGAACAGCTGAAGTCTCGATGTGACGCAAGCTTGGTGGAGTTCGAGAATATCGCGAAGGAGAATA
ATAAAACCACCGAGAAGGAAGGCAAGGGTCCCGGTCGCAAGAGAGGACGGGGACCCACTTTTAAGATAGGCGGAGTCATG
GTAAACGCGAAGTCCTTTTCAGCCGCAGTTAAGGAACTCGAGCCTTTGGATCAAGCTTTGCCATCCGATCCTGAGCAACG
CGCCAATTGGCATCTTGACATTAAGTTGAAACCGGCGAATTTCGAGTGCGAATGGACTTCCGTGGATGATTCCAGATTGT
TAAAAGGCATATATCAGCATGGCATGGGTTCGTGGGAAGCGATAAAAATGGATGCTAGTTTGGAACTAGGAGATAAGATT
TTTCCCAACGGTAGTAAAGTGCAACTTAAACGTGTGAACGCACGCGCGGAATATCTTCTGAAGATTTTGAAGAAACAGAT
CGATCTTAAGTTGGGAGTGGATTATGTCTCTCCCCTACCATTAGAAACCGAATGCAAGACACGATTGAGAAAGCCGAGAA
AGCCCAAGGAAGCGATTACTAAAGAGATTGTAGAAGATAATGACAGTTCCGGTGATGAAAATAAGAAATCAAAATCGAAG
GCTGATAAATCTGCGATGAAGAAAGAGGAAGAGACTGCTGCAAAGGAGATCAAGGAAGAAGCCGATGACCTGTCCGATGA
AAAGAAGAAGGATAAGAAAGTTAAAAAAGAAAAGAAAGAGAATAAGAAGGCGAAGAAAAACAAGCAAGCCGCGGGTCCCA
TGCACTTCACTGCAAATAATGAACCAAGGGCTTTGGACGTACTAGGCGAATTGGAGCCTAAAATATTCGACGAGTGTAAG
GAGAAGATGCGGCCAGTAAAGAAGGCATTGAAAGCCTTGGACAAACCGGATATGTCTTTGAGCGAGGAAGAGCGAGTCGC
TCGTGCGCGTCGATGCCTCTTTCAAATTGGAAATCACGTTCAAACATGCCTTGAAGAATATAAAGAGCGCGATCAAATCG
AAGAATGGAAAAGTCATCTTTGGGATTTTGCCTCGAAATTCACAAATTTCAAGGCAAAAAAGCTTTATAGAATGTACAAG
AATTTAATGAAACAGAGTGGCGACAGCAATGGCGGTTCCACATCCAGCCCTGACAAAAAGGAAGATGCTTCCAACGCTGT
GAAGAAACACAGTGAAAAATCATCCTACGATAAACATATCGACAAGCAACAGACATCGGATAGCGTTAATAAGGACAGGA
AGCGTAAAGTCGATGATATCGAGGAGAACTCGAATAGCAGTATACAAAGTAAGAAACATCTCTCGAGTATTTCTGCTGTC
AGCAGCAATCTCAGCAGCACGTCCGCGGTTACTATCGGTGCTATTACGATTACTCCTATAACGTCAAATTCCACCTCGAG
TGCCACTAACAGCATAGACGTGTCGCGACATAAAGAGCAAAAAGAGTCGAAGCACAAAGATATGAAAAGGGATAGAGAGC
GCGATAGAGATAGGGATAGAGACAGGGACAGAGGACACGACAGGGGTATGGATAGAATAAGCGGAGGAAAGGACGATAGG
ATTAGGAGAGACGGCGGAGGATACAACATGGGGCATTATAGCGGCAGCAGGGAGGACGATCACTGGTTGTCAAGAGATGG
AAGGGACATGAGAGACAGATTCAGCGATCACAAACGCGACCGCTTCGATCCTTACAGCCGAATGTCCGGCAGTTATCACA
GAGATAGAGACAGAGACAGAGATCGAGATCGTGGTATGCATATGAATGATAAGAGAAGTGACTATTATCGGTACTCGACG
GTGGGACCATCCAATTACGGATACGGACCAGGCTACGGTAGTAGCAGCGGCGGCGGTGGTTATCCTTCCGTGGATATCGC
TCCAGGTCACTTCAGAGGTCGAGGTTATCCAGGAGACGGTTACTCCAACGATTGGCGGCCGAGCAAGGATTACAGGCGGG
ACTACGATAGAAGACCACCGCCACCAAACGCTAACTCCTAG
PEP:
>LH16490-PA
MAYSRFTKWRIVKTESESGKESGSDSENESKSDSSSSGSNSGSGSGSESDSSSSSGSGSGSGSDSEKSEKSDAPAAQNDS
FQSKSSNHSTETKLRVKHEPTREWDENPDIYGIRRSGRSRKEPERLATNRESDSDSRKKFKKKGSHNSWNSESSDSESEE
TENRKSPPTKSQNRRAAQKTKEKARAIRKKRISESSENSSFDSDDNRRQVTRRTGTTVSYKEESEEGTDSDDLVEVEESN
APSAEPDNAESIEQVLGQRVGKKGVTGNITTIYAVEENGDPNPADLSNLETELQYWIKWKGWSHIHNTWESEESLKTQKV
KGMKKLENFIKRERKREQAREYAEPEDIDFLESQLELTQELLKSYNNVERIIADFKKPDSEHPDYFSKWENLSYAEATWE
DGALIEKKWPEKIKEFRDREDSKRTPSKHCKVLKSRPKFHQLKAQPTYMGLEKELILRDYQMDGLNWMIHSWCKENSVIL
ADEMGLGKTIQTICFLYYLFHAQQLHGPFLLVVPLSTMTSWQRELSLWGPEMNVVTYLGDVSSRNIIREYEWCYRDSKRL
KFNAILTTYEIVLKDKAFLGALNWAVLLVDEAHRLKNDDSLLYKALTEFHTNHRLLITGTPLQNSLKELWALLHFIMPTK
FASWEEFEKEHDNAAQKGYSKLHKQLEPFILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFEALRKGVKGS
TISFLNIVIELKKCCNHAFLTKPIEAEERSNEDYLQQIIRGSGKLVLLDKLLVRLRDTGHRVLIFSQMVRMLDILGEYLQ
KRHFPFQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKN
KVNIYRLVTKKSVEEEIVERAKQKMVLDHLVIQRMDTTGRTVLDKKNAGTNSNPFNKEDLTAILKFGAEDLFKDEEGGDE
EPPCDIDEILRRAETRDEAPTTVGDELLSAFKVASFKTAFDEDLESTNQPNDNDDESKDWAEIIPENFRKKVEEEEKSKE
MEDLYLPPRSRKTLQQINQSDGKSKKRRRTQDDSDEGEDSGSEAEGSDDERPKKRGRPRVTPRENIKSFTDMEIRRFIKS
YKKFPAPWKRLDDIATDADLQEKPMSELRFLVEQLKSRCDASLVEFENIAKENNKTTEKEGKGPGRKRGRGPTFKIGGVM
VNAKSFSAAVKELEPLDQALPSDPEQRANWHLDIKLKPANFECEWTSVDDSRLLKGIYQHGMGSWEAIKMDASLELGDKI
FPNGSKVQLKRVNARAEYLLKILKKQIDLKLGVDYVSPLPLETECKTRLRKPRKPKEAITKEIVEDNDSSGDENKKSKSK
ADKSAMKKEEETAAKEIKEEADDLSDEKKKDKKVKKEKKENKKAKKNKQAAGPMHFTANNEPRALDVLGELEPKIFDECK
EKMRPVKKALKALDKPDMSLSEEERVARARRCLFQIGNHVQTCLEEYKERDQIEEWKSHLWDFASKFTNFKAKKLYRMYK
NLMKQSGDSNGGSTSSPDKKEDASNAVKKHSEKSSYDKHIDKQQTSDSVNKDRKRKVDDIEENSNSSIQSKKHLSSISAV
SSNLSSTSAVTIGAITITPITSNSTSSATNSIDVSRHKEQKESKHKDMKRDRERDRDRDRDRDRGHDRGMDRISGGKDDR
IRRDGGGYNMGHYSGSREDDHWLSRDGRDMRDRFSDHKRDRFDPYSRMSGSYHRDRDRDRDRDRGMHMNDKRSDYYRYST
VGPSNYGYGPGYGSSSGGGGYPSVDIAPGHFRGRGYPGDGYSNDWRPSKDYRRDYDRRPPPPNANS
Swiss-ProtChromodomain-helicase-DNA-binding protein 1
KEGG     K11367     
SUPERFAMILYSSF52540  P-loop containing nucleoside triphosphate hydrolases superfamily     
Gene3DG3DSA:3.40.50.300     
PfamPF13907  DUF4208; Domain of unknown function (DUF4208)     
SMARTSM00490     
ProSiteProfilesPS51192  HELICASE_ATP_BIND_1; Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.     
CoilsCoil
ProSitePatternsPS00598  CHROMO_1; Chromo domain signature.     

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