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Gene detail [Fasta]

Species Linepithema humile
GeneLH18327
Positionscf7180001004942:406927..412674[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH18327
sequence mRNA:
>LH18327-RA
ATGACGTTGAACTTGGAATGTTCAGAGGAACCTCTTAGCGCAGCACAATTGAGATCAAGTATAAAACTTAAAGAGAATTG
TGATAAAGTTTCAACTATCTTAAAAGAAATAATTAATGATTATGGAGGTAAATTGGTAGCTCAAGCAGGAGCTGTAAGTA
GTTATCAGTACACATTACCTTCAGGTCCAACAGCAACCCCAACAGTAGTTCAGAACAATTCTCAAATTTTAAATGTTGCT
CAACAAAATAAGAATTCGGCACCAATCAAACTAAATATTGGTAATACAAGTGAATGTCCACTTGTATTACCAAGGAATTC
CAAGGAATATTCCCAGGGAAATATTCAGCTAGTAGTTGATCCACGTATGGGAGTCATTTTAGGACCTGTTACACAAACGC
AAGGTACAACTACTACGACTACATCTGTAGTTTCAACTGCAGCACAAACTCAACAAGAAAATTACAAGTATACCAGGTCT
GGACGTAGGACAAAAGTTCTTCAAGTACAACAGCCTGACATTATAGAAGAGTCTACACCTGTGGTTACTCATGTAAGATC
AAAGTCTGGACCAGCAACACATGTTGTTACACCAAGTAAGGCTAGTACAACCACTCAAGGTGTTACAAATCTGAGGATAA
AAACTGTCAATAAACAGACAGCGAATCAATCAACTGTCAGACCTACAGAACACACTAGTATAGGAGGAATATCTGTTGGC
AGCAATAATGCAGTCGGCGAACAGATTGACGAAGTCAAGAAGAACCAACCTGATGGCAGAGAATTTACATTTAACAAAAC
AACTGGTGGCCGAACTTTTCCATCCTTAGTAGTGGTTGCGAGACCAAATTTACGTAACAAAGATGTCGTACTCCAAATTG
CACAAAAAGAAAGACAAGCATTAGATTCTAAAGTTAAGAATGTGCTTATGTTTTCCGCCACAAAATTCGCTGAATGGTTA
ATCCAACATGGCTTAGTAAAATCAGAACAATACTGTTCGTATTGTATACAACACAATTCAAATTATCAGAAAATTAAACT
CAAATTAGGAATGTACAGCGATCAAGGAACATTTCCTTATTCTGGTGGCTATGTCTGGATATCCAATTGTTGTCCCGACA
GATTTGTATCCGTTTTTTCCGGTTCTATCTTCCAAGGAGCTCCTTACACACCTACAGTGTTATTAAAATTAATCTATCAT
TGGGCTTGTCAAACCAATGTGCAAAATGTAGTTTCCTGGGTAAAAGTATCAAATATATATCTGAAAAATTTTTATACAAA
TCTACGTAGTATTTGTACAGCAGCGATATGGGACAAAACCCGTAAGATGGGTGGCAAGAATTCAGTGATACAAGTTGGTG
TGATTAGCTTAGGCACCACTTCACAAGATGGACATTTGCGACAAGTGAAAGTCGAGGTCCTTGGTGTTTTAGATCCGACT
ACTTTGGACATACGATTACGCGCTTGTGACCCGATGCAAGACGGGAACAGGTCGTACAAAAGACGATTTAATAATATCCT
ACATCCATTAAAAGAATGGGTCCATACAGACTCCAAAATAATGACCGATTTCACTGTTGATAAAAGTACTTTACATGATA
TGGGCTACAATCACGTCGTGCAGTCTGCATTTGCAGATCAGAATATTAGAAATATCTTGAGTAATTTTCACATTATGGAA
TATCTTAGAAAAATTGTGCCAAGAATGTTTCAGAACACATTAAGTTTGCTTAGTAGGCAAATGATACAACAGTTCTTAGA
CGAATTAATATGGAGGGAGACATATGGTGCTTCGTCGGAACGTGCGTTTGACAATATAATCAAGCATATCGCAGAGCAAA
CTAGAATCGACCTCAATGAAAGTCTGCTAGATCGCCTGGCAAAGATAGCTTCTAATCCATTTCAAGATTGGTCTTACTCA
AGCATACCTTTATCAACTGAAATGTCATCAATGATATCACCGAAAGATGCAACTTCAATAAATGATGCAGCATCATCTCA
AAATACAAAAACTGCCGAAACTGTTCCAACCAAATCTGGCATAAAACGAGGAAGAAAGCGAATGCATACTGTAACAACTC
CGGAACAAGAACCAAAAAGGATTGCAATTGATCCTAAGAGTAGTAAAGAAAAAGAAAGTAAAAACGACAAAGAGCAAATT
CAACTACAAGAATTATATTATGCTACCATGGAAGGTGAAAAGAATCTGATGTTAAAAGAACACAAGTCTTCGTTATATTT
CAAGTGTTTCCTCTGTACGACGATAATGAAGTCTAATGTCGAGGTGATGGAACATATGGTCAGTCACGTACCTCCGCAAG
TACCCGGTCAATCAGAATTGTCTGTATGCCGATACTGTTGCACCGCACTTTCATCACAACACCAGATGCTTACTCATGTG
GCGGAAACACATAGCAATTTCGGTTTTTCCGACGGTCTCATGCTAGTTTGCGCTATTTGTGAAGAGAAATTCGGAAAGAG
CAAATCATTAATTGACCACTTGTTAATGATGCATTATCCTTCCGAAATGCCATATCGATGTGAAAATTGCAGTTATCGCA
CGTCTAGTCATAAGGACGTCATAGATCATTATTATAAAATTCATGAGAAGGGTGAAGGACTGCAATGTCCTTATTGCCTC
AAGGTAATACAATTTGTAAATGAGGGCAACCCGAGCACGTCTAGCGTTTACGCTTATTTGTCGCATATGCAAAGACATGT
TGTAAGAAGAGATCAAGGAAAAGGCAATAAGTGTTCTAGATGTTGTCTTTGGTTCAACCAAAAGAGTTTGTTAACGATGC
ACCAACGAGAATTACATGACTGTGTTTCTAATTCAAAGGCAATACCATACTCTGCTAGCAACAGCGGGATAATGATTTCA
AAAGAGCGACCAGAAATAATACGATTTACTATAGACAGTCCACTCCCCGAATTACCACCAGATGAAAATATACAGAAATG
GAGTACCGGGCCGATCACAGTGAATACTTGCACCAGATATTTGCCATGCCAGGAATGCGAAGAAGACATCGACGAAGAAG
AACATTATCCAGGCGAACAGCGATGTCAACAGTGCCGTTACATCACATGTTGTTGGCGTGCGTTTCAAGAGCATCAACAA
CAAATCCACAATGAAAGGCCGAAGACCAGTCTGATCGTGCCGTCTCCTTTAATTAACATCCCGCTAGAAAAAAAACTGCA
ATGTCTGTGCGGTTACACGTCGAATAATGGCAATCGATTAGCAAGACATTTGATAAAATGTAAAAGAACATCGGCACATC
CTGTTGACGAATCAACACAGTCTGGTATGCTTGATAGTTTAGGATTAGTGCCGAAGTCTGAGGAATGTGATGCATACGAG
AAATCCCACTCACGCAATTAAAGTGACATGGAAATGAAAAATGTAATCGCTATTAAGATGAATAAGGCAACAGATATAAA
ATTACGTAAAATAAAAATGTACAAGTAAAAAAGTGTTTGCACACACTACTCTCCGGAAATAATTTTGCGTGGAACAAGGT
TCTTATAAAATGCCTCATTATCATAGTTTCAATCATTGTTTCAAGTATGCAATGCACGGAGTATGCAAATACTTTTTTAC
CTACTGTATAATACTTCAACTACATTATGAATAGAACTGTATGTTTGAGTGGAACAAAACTTTTAAGATGCTACAAATAG
TTCTAGAATCTAAAAAAATTTTAATTCAATCAATTGTATTCAATTAATTATTTCACACACACGTATTTTATCGTATTATT
ATAAAACATTACATATTACAAGTTTACATATTTCCCTTTAATTAGTGAATAGTATAAATGATAGCATAATAATAAATACA
GCTTGATTTCCAATTTATGCAATTTGTTTCTGATATATAGTGTAATATCTTGTCTGCTTAAATTGAGATAACGTAATTTC
ATATATAATTTCATATACAATAATAAAAATATTGAAAAACTATTATACCAATTTCAAAGCTTATAGTGATACGTTGCAAA
AAATATATAAAGACAATTCTATAAAGTATTTATGAGTTCTTTTACATTGAAAATCATCAATTATAATGTAAGGCTTACGA
CATATTGATTTTGTCCACAAGAATTATTATATTAAACAAAATTATTTGCATATTCTATGTTTTATTTTTAACCATC
PEP:
>LH18327-PA
MTLNLECSEEPLSAAQLRSSIKLKENCDKVSTILKEIINDYGGKLVAQAGAVSSYQYTLPSGPTATPTVVQNNSQILNVA
QQNKNSAPIKLNIGNTSECPLVLPRNSKEYSQGNIQLVVDPRMGVILGPVTQTQGTTTTTTSVVSTAAQTQQENYKYTRS
GRRTKVLQVQQPDIIEESTPVVTHVRSKSGPATHVVTPSKASTTTQGVTNLRIKTVNKQTANQSTVRPTEHTSIGGISVG
SNNAVGEQIDEVKKNQPDGREFTFNKTTGGRTFPSLVVVARPNLRNKDVVLQIAQKERQALDSKVKNVLMFSATKFAEWL
IQHGLVKSEQYCSYCIQHNSNYQKIKLKLGMYSDQGTFPYSGGYVWISNCCPDRFVSVFSGSIFQGAPYTPTVLLKLIYH
WACQTNVQNVVSWVKVSNIYLKNFYTNLRSICTAAIWDKTRKMGGKNSVIQVGVISLGTTSQDGHLRQVKVEVLGVLDPT
TLDIRLRACDPMQDGNRSYKRRFNNILHPLKEWVHTDSKIMTDFTVDKSTLHDMGYNHVVQSAFADQNIRNILSNFHIME
YLRKIVPRMFQNTLSLLSRQMIQQFLDELIWRETYGASSERAFDNIIKHIAEQTRIDLNESLLDRLAKIASNPFQDWSYS
SIPLSTEMSSMISPKDATSINDAASSQNTKTAETVPTKSGIKRGRKRMHTVTTPEQEPKRIAIDPKSSKEKESKNDKEQI
QLQELYYATMEGEKNLMLKEHKSSLYFKCFLCTTIMKSNVEVMEHMVSHVPPQVPGQSELSVCRYCCTALSSQHQMLTHV
AETHSNFGFSDGLMLVCAICEEKFGKSKSLIDHLLMMHYPSEMPYRCENCSYRTSSHKDVIDHYYKIHEKGEGLQCPYCL
KVIQFVNEGNPSTSSVYAYLSHMQRHVVRRDQGKGNKCSRCCLWFNQKSLLTMHQRELHDCVSNSKAIPYSASNSGIMIS
KERPEIIRFTIDSPLPELPPDENIQKWSTGPITVNTCTRYLPCQECEEDIDEEEHYPGEQRCQQCRYITCCWRAFQEHQQ
QIHNERPKTSLIVPSPLINIPLEKKLQCLCGYTSNNGNRLARHLIKCKRTSAHPVDESTQSGMLDSLGLVPKSEECDAYE
KSHSRN
Swiss-ProtPogo transposable element with ZNF domain
SMARTSM00355     
ProSiteProfilesPS50157  ZINC_FINGER_C2H2_2; Zinc finger C2H2 type domain profile.     
ProSitePatternsPS00028  ZINC_FINGER_C2H2_1; Zinc finger C2H2 type domain signature.     
OrthologiGroup-00959    Pogo transposable element with ZNF domain      

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