Warning! We strongly recommend Internet Explorer (9.0 and later) and Google Chrome for better display.

Gene detail [Fasta]

Species Linepithema humile
GeneLH23485
Positionscf7180001005057:168142..172657[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH23485
sequence mRNA:
>LH23485-RA
ATGGCTGAGCTTATCGCGATACCTCTGAAGAAACCTTCCGATGTGGATATAACAAAACCGCTTACTAATGTCATCAAATC
GACATACAACAGCCCGGGAAGTCAGAAAGACTATACGGAAGCTATCTCGGAATTCAGTAAGCTGAGAAATAACGCACTGT
GGCGAGCATTCGAGAAATACGAAAGTTCCTTGCAGGTTATCTACAGCTATTACGATCAATTGTGCGCTTTGGAAGGAAAA
ATCCCCGCTCATGAATTGCAAATACCATTCAAGTGGAAAGATGCCTTTGATCGTACAATTTTTGGAGGAAAACTTAGCTT
AACAATCAGTACATTAGCTTATGAGAAAGTATGTGTGCTCTTCAATATCGCCGCTTTACAAAGCTCAGTGGCTGCTACAC
AATCGTTAGACAGCGACGAAGGGTTAAAGCTGGCAGCTAAATTATTTCAGCAATCAGCTGGAATATTTAATTATTTGAAA
GGAAATGTTATGATGGCGATTCAACAAGAACCAACACCTGATATTAGCCCAGAAACGCTTGGAGCATTGAGCGCATTAAT
GCTTGCACAAGCACAAGAAATATTTGTGCACAAAGCGATCCACGATTCTATGAAAGATGGAATTGTTGCTAGATTAGCAG
CGCAAGCAGAGGAATTGTATGCGGATGCTTTGAAACTATTTCAGAAAGAAATCTTCCGCGCATTTTGGGATAAAGAATGG
GTGCCTTTGATAGCAGGTAAACAAGCTGGTTATCGTGCCATGGCGGAATATTATCAATCGCTTGTGTGTAAGAACAATAA
ATCGATCGGAGAAGAAATTGCCAGACTAGAGCATGCCGTTGAATTGTTCAAAGCCGCACAGCAGAGATCGAATAAGCCGA
GCTTATTCCAAGATTACTCCAACAAGGCGCAGAGAAATCTAACGGAGGTGAAAAAGGATAATGATTTTATATATCACGAA
AGGATTCCAGACATGAAGAATGTAGCAGCTATAGGAAAAGCTAATGTAGCTAAATTACTCCCGCTTCCTGAAACGTTCAG
TTCTGATTTTAAAGATTTGTTTGTCGAACTGTTGCCTGTCACTATACACCATGCATTGTCGTCCTACGAGAATCGTCGTA
ATGAACTTGTCAATTACGAAGTCTCCAATCTTCGTGAAATGACGCAACTTTTAAACAGCGTTTTGGCAAGCTTGAATCTA
CCTGCAGCTATCGAAGATACAAGTGGAACAGAAATACCTCAGTCGCTATTGGATAAAGCTCTTTACGTGCGAGATGCAGG
TGGAATAAGTGCTTTGGAAACATCCATGATAGAACTGCCAGATTTATTGCAACGTAATAAAGAGCTTTTGGACGAGTCTG
AGAGAATGCTGCAAGAAGAGCGTGATTCTGATAACCAGCTAAGAGAGCAATTCAAAGAACGCTGGAAGCGGACACCTAGT
GCTCGATTGACAGAACAATTTACCAGCAATTTACAAAAATATCGTGAAATTATTAACAACGCAGTTTCTGCAGATAAGGT
GGTTCGTGAAAAATACGAAAACCATAAAGAAGGAATGGAAATCTTAAGTTTGGATGAAGATGAACTCGCTAGAGCTGTTC
CGAAAGGTTCGGCTGTTCAAGAAAGTAGCGTCGTTAGGCAGCTCAGAAAATTAATGGATGATGTAGAAGCATTGAAAGCT
GAACGAGATGTTATCGAGAGTGAATTCAAATCCGCCACCAATGACATGAAAGCGACATTTCTCTCGGCACTTGCCAAAGA
TGGTGCGGTCGATGAACCAAATTTATCTGTCGAGAGCTTGGGAAAGTGTTACGGGCCCTTGCAGAAACAAGTGCGAGAAA
GTATAGCGCGTCAAGAAAAATTAGTTGCTGAAATACAGAACTGCCACACGGAATTTACAAACGAACAGGCTGGTACTGGC
AGTGCGCGCGAAACGATACTCTGCAAACTAGCCTCCGCTTACGACGCATTTAAAGAGCTGAAAAATAACTTAACAGAAGG
GGCTAAGTTTTACAACGATTTAACGCAGTTACTGGTGGTCTTCCAAAACAAGATATCCGACTTCTGCTTCGCTCGTAAAA
CTGAAAAGGAAGAATTATTGAAAGATCTAACAACGAACCTGAGTCACAGCGGTCCCGCTGCAACGCCGAACATTCCGTCA
CATCACAGCAGCGGACCATCCGGTACAAACCAGCCGGCGGAAGCCGCCGCGACATCGCCGCCGCTGCCCTATCCCATGCA
ACATCAAGGTAACATGCCTATGCCTTATGCTACTGCGCCAGGAACACCGTATCCAGCGTATGTTCCTCCACCGATGCCGG
CGACGTATAATCCGTATGCTACGATGCCGTATCCTCCGCAAGGTGGATACAATCCGTACCAGCCTATGCCTCAAGTTCCG
TATGGAGGCTACGCGACATTACCACGTTACGGCGGCGCTCAACCACCGCACGGTCAACACCCATGGTGAACGATACCAGG
CGAAACAGCTACAGCGCGCGTGTGACTTTGCGCCGGATCTGCAGATCGCATGTTAATTGAAATAATATTTTATACACAAA
TTTTAAAAGCCTGCAATTATTCAATATTCAGAAATGTTGTGTATAATCCGAGAAAATTCACGTTTACTAATCGTTAATAT
GTATCACCGCAATGTGAAATCTAGTAGATTGATCGTTGGTATTTGTTAAGCTTTAATCCGCTTTGCGTAGGGAGCTTATT
ATCAATTTATAAATATATTTTGTAAAATAAGCCGAGAGAGTGTATATATAAATTATTTCCACTATAAATCCCTGGAATGT
TACGAAGTCTTGCAATTCGTTATATTCATGCTTATTGATATCACTTATCTTTATTTCTAAGCATCATGTTACTGTTATCA
ATGAATCAATTCATACAATGGAATTCAATACATTAGATAGCGTCGTTGGATTAGAAAAAAATTCTTCTCGCTAACAGATA
ACAATTGTTACGGATATTCGCATAAATAGGGGTACAAGCAATTTATTTATTACAACTTTATATGAGCTCTGTATATAAAA
TATTACTTGAAGAATAA
PEP:
>LH23485-PA
MAELIAIPLKKPSDVDITKPLTNVIKSTYNSPGSQKDYTEAISEFSKLRNNALWRAFEKYESSLQVIYSYYDQLCALEGK
IPAHELQIPFKWKDAFDRTIFGGKLSLTISTLAYEKVCVLFNIAALQSSVAATQSLDSDEGLKLAAKLFQQSAGIFNYLK
GNVMMAIQQEPTPDISPETLGALSALMLAQAQEIFVHKAIHDSMKDGIVARLAAQAEELYADALKLFQKEIFRAFWDKEW
VPLIAGKQAGYRAMAEYYQSLVCKNNKSIGEEIARLEHAVELFKAAQQRSNKPSLFQDYSNKAQRNLTEVKKDNDFIYHE
RIPDMKNVAAIGKANVAKLLPLPETFSSDFKDLFVELLPVTIHHALSSYENRRNELVNYEVSNLREMTQLLNSVLASLNL
PAAIEDTSGTEIPQSLLDKALYVRDAGGISALETSMIELPDLLQRNKELLDESERMLQEERDSDNQLREQFKERWKRTPS
ARLTEQFTSNLQKYREIINNAVSADKVVREKYENHKEGMEILSLDEDELARAVPKGSAVQESSVVRQLRKLMDDVEALKA
ERDVIESEFKSATNDMKATFLSALAKDGAVDEPNLSVESLGKCYGPLQKQVRESIARQEKLVAEIQNCHTEFTNEQAGTG
SARETILCKLASAYDAFKELKNNLTEGAKFYNDLTQLLVVFQNKISDFCFARKTEKEELLKDLTTNLSHSGPAATPNIPS
HHSSGPSGTNQPAEAAATSPPLPYPMQHQGNMPMPYATAPGTPYPAYVPPPMPATYNPYATMPYPPQGGYNPYQPMPQVP
YGGYATLPRYGGAQPPHGQHPW
Swiss-ProtProgrammed cell death 6-interacting protein
KEGG     K12200  PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein     
Gene3DG3DSA:1.20.120.560     
PfamPF13949  ALIX_LYPXL_bnd; ALIX V-shaped domain binding to HIV      
SMARTSM01041     
ProSiteProfilesPS51180  BRO1; BRO1 domain profile.     
CoilsCoil

You might be interested in these researchers

You might be interested in these references