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Gene detail [Fasta]

Species Linepithema humile
GeneLH21001
Positionscf7180001005004:128878..132698[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH21001
sequence mRNA: 
>LH21001-RA
ATGCCATTAGGCAACAATACTACGACACGGACGAAGAAAGTATCATTTGATGTAAAAGGTAAATCAACTGTTCGAGGTGG
CATTCCAGGGGAAAATCAATTTTTAACAATAGCAGCTGCCTTGCCAATTTTGCCAGTTCTACTGGAACCCAATTTGAGAT
TGAACATGCTGAAGCTGAAGGGTGTGATGTTGTTACATTACAATGGACAGGAGAAGCAAGAACAATTGTGGCATCAAGAA
CTCCTGCCGAACGAGAAAAGAACCCTGACAGAATATGTCTCGATAGGCGAGCATAATCTCTTGACCAAGATTGAAAGTTC
TAACTTTTCTCAATTGACAAAACTTGTATTTCTTGATTTATACGATAATCAAATAGAGAAAGTATGCAATCTCGATCTTT
TGGAAAATTTAAGAGTGCTTTTAATAGGGAAGAACAGAATAAGAAAAATTGAGGGTTTAAAGCATCTTTTCAAGCTAGAA
GTTTTGGACTTGCATGGCAATCAGATTCAGCAAATTACTGGCTTGGAGGATTTATCATCATTAAAAGTGCTCAATTTAGC
AGGAAATAACATTAAAACTATAGGTTCCAATGATTTTCAAGGATTAATCTCATTAAAAGAATTAAATCTGCGGCGAAATA
AATTAAAAAAATTGTTAGGCTTTGGTGAAACGCCACAATTGCAAAAATTATATTTGAGTAACAATGATATTCAGAAAATC
GAAGATATGAGTAGCCTCGCAAAAGCTTTGCAAATTAAGGAGATAACAATAGATGGCAATCCAGTAACTTCAAATACTGA
TTATATCCCTTTCCTTGTCTCATATCTGCCAAATCTACAACTTTTATCAACAATACAAATTAACGAACAAATTCGGAGAA
CAGGAATGGCTTGGAGATCCTCTAAAGAACAGACTAATTCGGCATTCCTTGATCTCAGTGCACAAGTTTGCATGAACGTG
CGCAGAGAAGAGGTGATATCAAATGCTAAAACAAATTGGGAATTTCTCAGATCTAGAACTAAAGTCCCTAATGATAATTC
CAATAGAATGATGGGCAATAATACAGGCAACAATATATTACACGTACAAAGTTCAAATAAATTTAATGCTATAAATCCGA
AAAGTTTAGACAAAGCTAAAACCAAGGGCTTCGGTAGTCTTACATCGATAAATGAAAATGTGGAAGCAAAAAAGATACAT
ATAAAAAAGAGAAGCAGCTCCAGCGATAATTTGTTCAAATTCGAAGATACCTCTAAATCATATCCTTTGGAATTCAAGCT
TCCGCCTATATTGGGTTCGATAGTAGATAGTTTAACAACCAATAAATCCGAGGATAAATTGCTTAATAAAGAAAATGCTC
GTAAAATGAAGATGCTTAATAGCATGGATAATTTATCGGATAGCGAATCTAACAGTTCGGAGAGCCATGAAAGTTTAAAA
AGTGGTTTGAGATGTCATCTGTTTACTCCGAATAACAGTTGCGCCTCATCTATGGATTACGACAAGTCTACTATCTGTAA
AAAGTTTACTGCAGCGAAGGATGTATCTCCGATTACCACGGAAAGTTTCAATGATGAAGATCATGAGAGCCACATGCAGG
ATAAGACGGTTACTCAGAGATTCTTGACACACTGCGACACGGCAATGAACGAACATAAAAGCTTAAGCAACAAATTGATT
CAAAATATAAAAATATTTCATAATCAAGACGAGCAGAGTAATTGTCAGTCAAAATCGACTATAAGTTCTGGCTATTGCTC
GTTGAGCTCAAAGACTAGCAGTTTAGATAGTTGTAAATCATTGTTAAGAGATTCTGGCACTTTATCAATTCCTAAGAACG
TAGTTCACAAATCTCACGAGTGCGATAAAGGTAGAATTAAGAGTGCTCAAGCAAAGAAGGTAGAATACTATAAGAGTAAT
AGAGCCGCGACGGCGAGAGCGAAAGCTCTCGCTCCGCCAAGTCCGCCGCCCCAACAAATACCACCTAAAGAGAGGGAACA
GGGCGGAGATTATTTAATAGAGATTGTTGGTCGATGCTTAAACATTTATGGTCAAGGTGCTTTACGCTTTATAGATAGGA
CTTGGGACGTGTCAAAGGCTCAAGATGTCAATGTTGTGAAATTTAATTATGTACAATTTAACGACGTGGCGAAGATTCTA
AGCAAAGTGAAAAATAGATTTCCTCACGCGGAACATTTCGTGTTCAAAGAAACTAACATCAGTCTTCTTGGTCAGCTGAA
TGCTCTGGCTGAAGTACAGGGATTGACGAGCATACAAGTAGATGCGGGAAATCCTATTGTGTCCAAGGACTGGAAAATGT
ATGCTATATTTCGATTAGCTCATTGGGGACTTGCAATTATCAATGGCAAGGAGATTACGGCTGAAGAAATCGAACTCGCA
AATCGAGAATACGCTGGTCTCGTTGATATAGTTATGTGTTCACTGCCAGATTCTTTATTACAACCTTTGTTACAAAGACT
TCATTTAGAAAAAGTGCAAAGACAAAGCGGGGAGCAAATTACTGCCAAACAATTTTTGTTCAACTGCGACCCGGCGCTTA
GAAGTGTCGTTGCCAAGGAAGCGTTACAGTGGAGAAAAGGAAATGTAACACAGGAGGACCTTATTTGGAGACACAAGGGA
AAAGTACACTTGCTAAGTTTGATCAATCTCACTATAAATGCCATACGAAAGTTGCAAGTTTTAGAGAAGCAGTGGCCGTG
TATTCTGTATGACATTACTTATAATACTCTATCCGACTTTTCCGAAATGGACGTATACATGAAACGTTGCAGCAAAACGC
TTGAAAGTAATAAGTAA
PEP: 
>LH21001-PA
MPLGNNTTTRTKKVSFDVKGKSTVRGGIPGENQFLTIAAALPILPVLLEPNLRLNMLKLKGVMLLHYNGQEKQEQLWHQE
LLPNEKRTLTEYVSIGEHNLLTKIESSNFSQLTKLVFLDLYDNQIEKVCNLDLLENLRVLLIGKNRIRKIEGLKHLFKLE
VLDLHGNQIQQITGLEDLSSLKVLNLAGNNIKTIGSNDFQGLISLKELNLRRNKLKKLLGFGETPQLQKLYLSNNDIQKI
EDMSSLAKALQIKEITIDGNPVTSNTDYIPFLVSYLPNLQLLSTIQINEQIRRTGMAWRSSKEQTNSAFLDLSAQVCMNV
RREEVISNAKTNWEFLRSRTKVPNDNSNRMMGNNTGNNILHVQSSNKFNAINPKSLDKAKTKGFGSLTSINENVEAKKIH
IKKRSSSSDNLFKFEDTSKSYPLEFKLPPILGSIVDSLTTNKSEDKLLNKENARKMKMLNSMDNLSDSESNSSESHESLK
SGLRCHLFTPNNSCASSMDYDKSTICKKFTAAKDVSPITTESFNDEDHESHMQDKTVTQRFLTHCDTAMNEHKSLSNKLI
QNIKIFHNQDEQSNCQSKSTISSGYCSLSSKTSSLDSCKSLLRDSGTLSIPKNVVHKSHECDKGRIKSAQAKKVEYYKSN
RAATARAKALAPPSPPPQQIPPKEREQGGDYLIEIVGRCLNIYGQGALRFIDRTWDVSKAQDVNVVKFNYVQFNDVAKIL
SKVKNRFPHAEHFVFKETNISLLGQLNALAEVQGLTSIQVDAGNPIVSKDWKMYAIFRLAHWGLAIINGKEITAEEIELA
NREYAGLVDIVMCSLPDSLLQPLLQRLHLEKVQRQSGEQITAKQFLFNCDPALRSVVAKEALQWRKGNVTQEDLIWRHKG
KVHLLSLINLTINAIRKLQVLEKQWPCILYDITYNTLSDFSEMDVYMKRCSKTLESNK
Swiss-ProtLeucine-rich repeat-containing protein 49
KEGG     K16606     
SUPERFAMILYSSF52075  Outer arm dynein light chain 1 superfamily     
Gene3DG3DSA:3.80.10.10     
PfamPF00560  LRR_1; Leucine Rich Repeat     
SMARTSM00365     
ProSiteProfilesPS51450  LRR; Leucine-rich repeat profile.     
OrthologiGroup-00331    Leucine-rich repeat-containing protein     

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