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Gene detail [Fasta]

Species Linepithema humile
GeneLH13588
Positionscf7180001004715:1152183..1155294[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH13588
sequence mRNA: 
>LH13588-RA
ATGGGTAAAGGACGGAAAAATAAACCGAAAAAGAACTTTGCTGAAAAACGTCGCGAGAAGCAGAAGAAAAAAGATGAATG
GGATAATACTCCACACAGAAGTTACGCAGATATTGTTAGAGAGAATAAGGATTTTGAGAATTATTACAAAACGCAAGAAA
TAGTTCCAGAAGATAAATGGGAGGCGTTTATCAGCACTATGAGGACCAATTTGCCAGTAGCTTTTCGTATTACTGGTTCT
AAAGCCGAAGCTAAAGTTTTGTTAGAAATAATCAAAAGTGACTTTTTCAAAGAAATTTTGAATACAAATTTGGATTCAGA
TAAGGAATGCTCCAATAATGATGTAAAAACTATATTACATAGTTTACCTTTTTATCCGGAGAAACTTGCTTGGCAATTAC
AATTGACTAGAAAAGATATCAGACGATCGGAAGCATATTTTAAATTGCATAACTTTCTTATTGCTGAAACAAATAATGGC
AGTATCAGCAGACAGGAAGTAGTTAGTATGGTCCCTCCTTTGGTCCTGGATGTGAAGCCTTCACACAAGGTTCTCGATAT
GTGTGCAGCACCAGGATCAAAAACAGCACAGCTCATAGAAATGATACACGCAGACGAAGGAAATGTTCCTCCTGAGGGTT
TTGTAATAGCTAACGATCTTGACAATAATCGTTGCTACATGCTTGTGCATCAAGCTAAAAGATTAAACAGCCCAAACATT
CTTATTACAAACCATGATTCATCAGTTATGCCTAATTTTATAATCACAAAACCAGATGGCACTAAGGACACATTAAAATT
TGATAGAATACTTGCGGATGTTCCATGTAGTGGTGATGGTACTATGCGAAAGAATCCAGATATATGGTGCAAGTGGAGTC
CTGCTAATGGCAATAATCTCCATGGAATTCAGTACAGAATAGCAAAACGTGGGTTGGAATTGTTAGCAGTTGGAGGAAGA
ATGGTATATTCTACATGTTCTTTAAATCCGATTGAAAATGAAGCAGTACTTCATAGGCTTCTTTGTGAAACTGGAGACTC
GGTACAATTAGTTGATTGTAGAGATTTAGTACCAGGATTAATATGCGATTCTGGTGTCACGCATTGGAAACCGGCATCTA
AAAATTTACAATATTATGATACCTGGGACGATGTTCCAGAACAATGGCAGACGCAAGTACGACCAAAAATGTTCCCTCCA
CAAGCAGATGAGGTTTCCAGCATGAGAATATTACCACATCATCAAGATACTGGAGGCTTCTTTGTGGCCATATTGGAGAA
AATAGCACCCTTGCCGTGGGAAAATAAAACTTGTACTTTAAGTCAAAATGTCCAGAATTTGGGTGACAATGGAAACAAGA
ATGAAGTCAGTCTTGAAGAAGAAGCTTCACGAGACGAAAAACGTTTAGAAAGTGGAAAAAGGACATTAGAAGAAGAAAAA
AAGTCGCGGGAGTTACAAAGGAAGCGGAGAAAGATTGTTGGCTATAGGGAAGATCCGTTCGTCTTTTTCAAGGATGAAAC
AGAAGATGTATGGCAGTCTATTAAAAATTTTTACGGTATATCTGATGATTTGAATCCACAATGTTTGTTGGTAAGATGTC
ACGAAGGAAAGAAGAAAAATATTTACTTTACGTCACCGGCAATCCGTGATATAGTAATGTCTAACGAGAATAGAGTCAAA
ATGATTAATACTGGCGTTAAAACATTCGTACGATGTGACAATAAAAATATGAGTTGCGCCTTCAGACTTGCTCAAGAAGG
GATGCAGAGTATCATTCATTATATAAGTGACAACAGAAAGCTTCAGGTCACGAAAGAAGATTTAATAATGCTTTTACAAA
ATAACGATCCACATACACCGCCTGAAATTGTAAAATTAAATCCAGACACTCAGGAACGTCTCAAAGATTTTGCGACTGGA
AGTTGTATATTGTTATATAAAGAAGAGAAGACTGACAATTTAAACCAGCTAAATCTCCAACTGGTAGGCTGGAGAGGAAT
AATGTCTCTTAGAGCATACGTGACTACTTGTGATGCGATTCACTACTTACGGCTTTTAGGAGCGGATTGTTCTAAATTTG
AGAGGAACAAATTCGAGGAAAATCGCGCAGCCGCATTAGCCGAAGATATTAACAATGGTGACATCAAACGTGAAAATTTA
ATTAATGAAAATGCTGCAATGGAGAACGGCGATTGCACAGAGAAAGTCGACGGTGCAGAGATGCCGATCGAAACG
PEP: 
>LH13588-PA
MGKGRKNKPKKNFAEKRREKQKKKDEWDNTPHRSYADIVRENKDFENYYKTQEIVPEDKWEAFISTMRTNLPVAFRITGS
KAEAKVLLEIIKSDFFKEILNTNLDSDKECSNNDVKTILHSLPFYPEKLAWQLQLTRKDIRRSEAYFKLHNFLIAETNNG
SISRQEVVSMVPPLVLDVKPSHKVLDMCAAPGSKTAQLIEMIHADEGNVPPEGFVIANDLDNNRCYMLVHQAKRLNSPNI
LITNHDSSVMPNFIITKPDGTKDTLKFDRILADVPCSGDGTMRKNPDIWCKWSPANGNNLHGIQYRIAKRGLELLAVGGR
MVYSTCSLNPIENEAVLHRLLCETGDSVQLVDCRDLVPGLICDSGVTHWKPASKNLQYYDTWDDVPEQWQTQVRPKMFPP
QADEVSSMRILPHHQDTGGFFVAILEKIAPLPWENKTCTLSQNVQNLGDNGNKNEVSLEEEASRDEKRLESGKRTLEEEK
KSRELQRKRRKIVGYREDPFVFFKDETEDVWQSIKNFYGISDDLNPQCLLVRCHEGKKKNIYFTSPAIRDIVMSNENRVK
MINTGVKTFVRCDNKNMSCAFRLAQEGMQSIIHYISDNRKLQVTKEDLIMLLQNNDPHTPPEIVKLNPDTQERLKDFATG
SCILLYKEEKTDNLNQLNLQLVGWRGIMSLRAYVTTCDAIHYLRLLGADCSKFERNKFEENRAAALAEDINNGDIKRENL
INENAAMENGDCTEKVDGAEMPIET
Swiss-ProttRNA (cytosine(34)-C(5))-methyltransferase
KEGG     K15335     
SUPERFAMILYSSF53335  S-adenosyl-L-methionine-dependent methyltransferases superfamily     
Gene3DG3DSA:3.40.50.150     
PfamPF01189  Nol1_Nop2_Fmu; 16S rRNA methyltransferase RsmF     
ProSiteProfilesPS51686  SAM_MT_RSMB_NOP; SAM-dependent MTase RsmB/NOP-type domain profile.     
PRINTSPR02008     
CoilsCoil
ProSitePatternsPS01153  NOL1_NOP2_SUN; NOL1/NOP2/sun family signature.     
OrthologiGroup-00893    tRNA (cytosine(34)-C(5))-methyltransferase      

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