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Gene detail [Fasta]

Species Linepithema humile
GeneLH19790
Positionscf7180001004972:1227764..1234421[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH19790
sequence mRNA: 
>LH19790-RA
ATGGACAATAAGGTGGATGTTTCGGAAATTGAAAATATTTCAATGATTGGAACATCTGAAATTTTTCATCTGCCTGACGT
CCCAGAGATATCGGAGGTATTAGAATCAACTGGCCTTAGCCCCTTAACTTCGTCCTTGGATCAGGCTCTTACGCTGCAAG
AAGATAAAGCTCTTTCGTCTGAAGTTAACATGGGCATTGAGGATACATGGACTGAAGCAAATAGTTCAACGTCAGACTAT
GCAATTCCTCTTCCTCCGCCACCTGGATTAAATGATTTCTCGGATGTTGGCGCCGATCCAATTAGTGATTCTGGGACGGG
CATAGAGCATGGTCCGTTTCTACCACCTGGCACACCAGCGCTTAACAATTTGTTCGCAGAAGCTGGAGACTCCCATGATG
ATTCGCCAATGGAGATGGTTGTCCTGCCTGCAGGTGTATGTGGTCTTCGTAATTTGGGTAATACCTGTTTTATGGCAGCA
GGGTTGCAATGTTTGACAGCTACTCCACCTGTTCTACGGCATTTCTTGGATTTACAGCAGAGAGGAGAAAAACTGCCTCC
ACCTGGGTCGCTAATGGCACACTTTAGTGTACTTCTTGGGAAAATGTGGTCTGGGAGATATAGTGTTCTCAGACCAACAG
AATTTAAACAGACTTTAGGAGCTTACCATTCACAATTTAAGGATTATAGGCAGCACGACTGTCAAGAATTTCTGGCGCTT
CTATTGGATTCTCTTCATGAGCAAATGAATACAGCAAAGTGTGCCAAGAATTGTCAAGTTCCGCTATCCACAACCACTGC
CAATTTTAACTCTATCGAAAACTCAAATGAAAAGACCCTTTCCTCTGTCACTGCCATGGCTAATTCCAATTGTAATCCGG
ATCTTTTGGAAATGTACGAGTGCTTATCTCCGGAATGTCCAAATAGTCCCAATGTAACTATGGCTGGTTCACCAAGAGAC
TTCGATTCATCGATTGGTGAACTCGATAGTATCACGAATTCACCGAGAGATTCGCCATTAAACGGCGAGGATGACGAGGA
AACGCTAGATTCAGATGAAACCATCGAGGCGAGGTCGAATACTTTCATTCACAACAAAGTGAATGAGGAAGGCATGAATG
ACGTCACTCAAACGCGATCTTTGAGATTGGACACCTTGATTGAACTGTCGAAAAGCGTGCCGCAGTATGGTGGTCTATAC
GATATTCACAAAGAGGCTAAGACCAGTAATGCCAATTTCCTAGTAACGCAACAAGAGTGTAATAACGAGATTCATTACGA
CTCGCAGAAGTTTCCGAAGGATAATGTTCGCAGGACGCCGTTAGACAATTCGAACCTAATGGAGAATCATGACTTTGACA
ATAAGAGCGTCAGTATCAAGCGTATAAAGGAGGTGAATGTCCAGAAGGTCAACGGCAGTCTTGATCACGCGTCGAGCGGC
TCCGACATCGAGTACGACAGCGGTCTGGAAAAGTGTAACGTAAAACGCATGCGATTGGACGATCAGGAGAAGAATCACAA
ACACGACGGTCTTAGCAGCGAGAATACCCAGTGCTCGCGGATTTCACAGAATTATGGAAATGGCGCTATTGCCGCGCAGG
ACGAGATTGAGGCGGATAAACACTGGGTGAAGCACTTGCGATCCAACAGGAGTATCATTATTGACACTTTTCAGGGCCAG
TTTAAAAGCACGGTCGTATGTTCGGTTTGTAATCACGTTTCTGTTACCTACGAACCTTTTATGTATCTATCTGTACCATT
ACCTCACGCCATGGAGAGGCAGTTGAATGTCACGTATATTCCTGCAAATGGTGACCAGCCTATAAGATGCGTCGTTTCCT
TGAACAAACAGTCGCGAATTGGGAAACTGAAAGAGGAATTGTTAAAGACGCTCGGCAAGGAGAATGTTTCAGTGACTAAT
ATCGCACTCGCGGAGGTTTTAGAAAACCATATAGCGAAGATTCTGGTAGTTACGGGGCTACATTTCGCCGTACAAACTCA
CTATTCTCTTTGTTCTCTTTTTCTTTTCGTCTCCCTTGCTCCCCTCCTTCACGTTTTCTCTCTCCATTATAATTTCGTGA
ACGCTGCCGGTCTTTTACCGCTATTGCTTTTTGACTATATTATTTTCCCCTTGCACCGTAGGTATCGGGAATTACTTGCT
TGCTGTAGCTTATCGTACTTAGGCGGGAACATCACTCTCTGTTGGATTCTACATCAAGGTTTTAAATTTAAGGACGACAA
TACACTCTTGAGACACGTCAATGATACGAATCGATCGATATACGCCTTTGAACTCACGGAACCTCCCGATGCATACACTT
CAGTGTCTGATGGCGGTGGAGATCGCCCGGCGGAAACGGACTCTTGCCAGAGATGTACGATCACGGGTGAGGAAGTGCCG
TGTATGATCTGTCTTGAGGAGCTAGACGGCGATTTGAAGCGACACAGCGGGAATAGCTGTAATTTTATCATGTGCGATCC
GTGCATCGAGAATTACTTCAAGAATCAAACGGAAGAACCTCAAACGTGTCCAATGTGTGCCACGTACATGACAGCGTCGT
CATTCACGAAAATAGATCAAACCGGCCGACCGAGACCCACTGTGCGTATCTTGAATGTACCTTTGGTGCTGAGGCACGAT
ACGACGAACGAGACGACGAATAACCGGAAAGGCACAAAGCTCTTCGGTTTTCCGCACTTGATACGACTCCCGTCGAGAGT
GAACGCACGGGATTTGTATGATATTGTTAAGAGAAACGTGCCGCACGAAGGACACTACACGATTCATTTCGTTGATGGAC
AGGGTCATCATTGTTCGCGATGTATGTATACTGCACATTGTACGGGATGCAGTGTGCCGGAGACGGGAATGGTCGCGCTA
CAAAACGGTGACACGCTTGCGGTTCGTTATACCGAGTATGTTCCTAAGGTTTTGCATCCCATCGATCACGTCAGTGTCAG
TAAACAACGGCCGCATCATCCATTATCTCTTTATGATTGCCTTCAAGCGTTTAGTCAGAGTGAAACTTTAGATGAACACA
ATCCTTGGTTTTGTCCAAAATGTGGATGTAATCAGTGTGCCACGAAAACGCTCACGGTACACCGATATCCTAAGTTCCTT
ATTGTATATCTTAAACGATTTGTATTTTACGAGTGCGCGAGTATGAAATTAGATGACAAAGTTACATTCCCTTTGGTGGG
TTTAAGTGTAGGACGCCACCTTTATGATCTCTATGCCTGCGTGTGTCACTTCGGAGGTGTGTCTGCGGGTCATTACACGG
CATATGCGAAGAATCCTCGCACAGATGTCTGGTATTATTACAACGACGAGATAACGAGCAGACAAAAGCCGCAGGATGAG
GACTTTAGCAATGCGTATATATTGTTTTATAGTCGACAAGGGACCAACTTGAAACCGTGCAATATATAACAAGTGGTGTA
TGTAACTAGATAGCCGGTAGAATACATCGATCAGACGGAGAAGGGACAATTGGGGGTAGTGACGAGAGGACGGAGTGTGG
CGCACGGGAAAAATGACGTTTGCGTTCTTCCATGTTTCCACTACGAAGAATTATTCGGGTACTTTATACTTTCGCAATTT
TTCCCTTCGTGTGTCCATTTTGTTGCGCTTCTGTCTGTGGGCATTTACCTCCCCTTCTGCCTCTGCTAGAGTTATCTTTA
AAAGTGCAATGAAATTATGGACGCAGTATGAATAGACGGAGAATTGCCCACCTCTACCCAACAGAAAAGCGCGACGCCAG
CGAATAATCGGTTATAAAACGAATTGTACA
PEP: 
>LH19790-PA
MDNKVDVSEIENISMIGTSEIFHLPDVPEISEVLESTGLSPLTSSLDQALTLQEDKALSSEVNMGIEDTWTEANSSTSDY
AIPLPPPPGLNDFSDVGADPISDSGTGIEHGPFLPPGTPALNNLFAEAGDSHDDSPMEMVVLPAGVCGLRNLGNTCFMAA
GLQCLTATPPVLRHFLDLQQRGEKLPPPGSLMAHFSVLLGKMWSGRYSVLRPTEFKQTLGAYHSQFKDYRQHDCQEFLAL
LLDSLHEQMNTAKCAKNCQVPLSTTTANFNSIENSNEKTLSSVTAMANSNCNPDLLEMYECLSPECPNSPNVTMAGSPRD
FDSSIGELDSITNSPRDSPLNGEDDEETLDSDETIEARSNTFIHNKVNEEGMNDVTQTRSLRLDTLIELSKSVPQYGGLY
DIHKEAKTSNANFLVTQQECNNEIHYDSQKFPKDNVRRTPLDNSNLMENHDFDNKSVSIKRIKEVNVQKVNGSLDHASSG
SDIEYDSGLEKCNVKRMRLDDQEKNHKHDGLSSENTQCSRISQNYGNGAIAAQDEIEADKHWVKHLRSNRSIIIDTFQGQ
FKSTVVCSVCNHVSVTYEPFMYLSVPLPHAMERQLNVTYIPANGDQPIRCVVSLNKQSRIGKLKEELLKTLGKENVSVTN
IALAEVLENHIAKILVVTGLHFAVQTHYSLCSLFLFVSLAPLLHVFSLHYNFVNAAGLLPLLLFDYIIFPLHRRYRELLA
CCSLSYLGGNITLCWILHQGFKFKDDNTLLRHVNDTNRSIYAFELTEPPDAYTSVSDGGGDRPAETDSCQRCTITGEEVP
CMICLEELDGDLKRHSGNSCNFIMCDPCIENYFKNQTEEPQTCPMCATYMTASSFTKIDQTGRPRPTVRILNVPLVLRHD
TTNETTNNRKGTKLFGFPHLIRLPSRVNARDLYDIVKRNVPHEGHYTIHFVDGQGHHCSRCMYTAHCTGCSVPETGMVAL
QNGDTLAVRYTEYVPKVLHPIDHVSVSKQRPHHPLSLYDCLQAFSQSETLDEHNPWFCPKCGCNQCATKTLTVHRYPKFL
IVYLKRFVFYECASMKLDDKVTFPLVGLSVGRHLYDLYACVCHFGGVSAGHYTAYAKNPRTDVWYYYNDEITSRQKPQDE
DFSNAYILFYSRQGTNLKPCNI
Swiss-ProtUbiquitin carboxyl-terminal hydrolase 4
SUPERFAMILYSSF54001  Cysteine proteinases superfamily     
Gene3DG3DSA:3.30.40.10     
PfamPF00443  UCH; Ubiquitin carboxyl-terminal hydrolase     
ProSiteProfilesPS50089  ZF_RING_2; Zinc finger RING-type profile.     
ProSitePatternsPS00972  USP_1; Ubiquitin specific protease (USP) domain signature 1.     

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