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Gene detail [Fasta]

Species Solenopsis invicta
GeneSINV23787
PositionSi_gnF.scaffold01716:8548..12063[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/sinv_10/?name=SINV23787
sequence mRNA: 
>SINV23787-RA
AACAATCCTCAGTGGAAATCGTTCCAGCCGCCAATCATGAACTCTGACCCAGCAATACTTGATTATAAGTCTATGGCTGT
ACCAACTCCTAAAGCCATAACGGGATCTCATCAACCGACGTCAAACAACTATCGAAATGGTACCAATTATAGCGGTGATC
ATTACATGGGTTCACATCCCGATTGTGGTAAAAATTCTATTAACTACGGAAGTTATCCCGGCACGCAATCGTCACCACGC
AATGGTGCAAGATTTCCGTTAGAATTCCCGGGTATGGAAACAAATGCTAGTTATACGAACGAATCTGCCACTAATAATTC
TACCTATCAGGATCAATCTGCAAATCAAGGAACACGGGAAACTGGTATAATTGAGAAGTTATTGCATTCTTACGGATTCA
TACAATGCTGTGAAAGACAGGCGAGATTGTTTTTTCATTTTAGCCAATTTAGTGGTAATATTGAACATTTGAAGATTGGA
GATCCTGTAGAGTTTGAAATGACCTACGATCGACGAACAGGCAAGCCCATTGCAAGTACCGTTAGCAAAATCGCCCCAGT
GGCATTAGGAGATCAACGATGCATCGGTAATGTAACAACAGAGTTACAAGCGAGTGGCGATTCACAGGGTCGTATCAGTT
ACGAAAACCGTGGAGAATGTTTTTTTCTGCCATATACCAAAGATGATGTCGAAGGAAATGTCACCTTACGTGCTGGTGAT
AAAGTGTCATTTCAAATTGCTACTAATCAACGAGGAAACCTGGGTGCATGTAATGTAAGGCTGGAAAATCCAGCACATCC
AGTTCGTTATCGTGGAGTGGTATGCTCAATGAAAGAAAATTTTGGTTTTATCGAGCGTGCTGATGTAGTCAAAGAGATAT
TCTTCCACTTTAGCGAGGCTAAATCTATGAAAGAAGAACTTAGGCTAGGAGATGATGTGGAGTTTATAATACAAACGCGC
AATGGGAAAGAAGTAGCTTGCAACATTACAAAGTTACCACCTGGCTCAATTGTATTTGAGGAAGTAAGCAATGAAGTAGT
GAAAGGACAAGTGTTAAAACCGTTGGAGAGAGGCAATGCTGCTCGTCATCAAAATGATCCGTTAAATGGTCGTATTCGAT
ATAGAGACAGTAATTCTGAACCTCTTGAAGCACCTTTTGGTGATAAAGATCAAAAGGGAGATTTCACTCTTAGGCATGGG
GACTGGGTCCAATTTCGTATTGCAACAGATACTAGAGATCAACTGAAAAGAGCTACACAAATAATGTTATTGCCAGAATC
TTTCACTGTATCTGGGGAAAAGCGAGAGCAAGGTGTAATACAGTCTCTCAAGGATGGATTTGGCTTTATTCGTTGTGTAG
AAAGAGAACCTAGACTTTTCTTTCATTTTAACGAAGTTCTTGATGTTGATAGAGAAATTAGTGTAGGGGATGAAGTTGAA
TTTACAGTTGTTCAAGACCCGTCATCATCATTCTCTAATACTCGACAAAGTGCTATTAGACTGAAACATTTACCAACGGG
TACCGTAACATTTCAAACTATTATAGAGAAGGATATATTAGGTACTGTAGCACAGGACACAAATTTGATGGAACCTGGCC
TTATTAATTATGGCCAGCAGAAAAGCATTATTTTCTTCTCCAAAGATTGCGATCCTAAACATATTCCAAAATTGGGTGAT
AAGGTAATGTTCAATGTTGTTCAAGTGAAACGAAATAAAGAACTTGTTGCTGAAGACATATTTTTAGTAAATGCCGCTGG
TGAAAAAATTCAAAATGTTAACAAAAAATCAAATGGACAAGTGTGTCAAGGTTTTATTGCCGCCCTTAAAGATGGGTTTG
GCTTTATTGAGACAGTAAATCATGATAGAGAAATATTTTTTCACTACAGTAATTTTGAAGGAGACGCTAGTACATTGGAA
TTAGGAGCTGATATCGAATGTACAATTAGTAATATGAGTAATGGCAGAGGTTCTGGAGGTTGTGTAGCAGCCGATCATGT
TAAGCTGGTGCCTCGTGGAAGTATTCCTAGGCCAACAGCTGTCAGTGAAGTACTCGAGGGCACTGTAATACGACCATTAA
GAAGTGCAAACCCCGAGCAAGCAGAGTATGCTGGTTTGATCAAGATTAATCCAACTAATGAGAATGAGGAAACGCCGGAA
TATGAATTTGGAATCATGGGACTTTCTAACAAACGGGAGCTATTACAGGCTGGCGATCCTGTGCAATTACAGGTCGATTC
AGCCGGTCACGCTTGTAACATCGTAGCCGTCAGGAAAAAAAGGAGGGCGACCGTGGACGCGATGAAGGGCCCTTTCGGTT
TTCTTGCTTACGAAGTTGATGAGGGCAAAAAATTATTCTTTCACGCAAGTGAAGTTCAAGATCACGTTATGCTGCAGCCA
GGAGATCAAGTGGAATTTGTTTTGGTTACTAATCAACGTACTGGCAAATCATCAGCGTGCAGCGTAACTCGATTAAGCGA
TGCAGTCCAGCAACGACCCGAGCGATTAATAAGCCGATTACGTACTATATCTTTGGAAGATACGGGCCCAAAATTGACTG
TGGTCAGACAACCAAGAGGGCCCGATGGCACGCGCGGGTTTAACCAGGAAAGATGTCAGCGTATTCCTGGTGCCATAGAA
GAA
PEP: 
>SINV23787-PA
NNPQWKSFQPPIMNSDPAILDYKSMAVPTPKAITGSHQPTSNNYRNGTNYSGDHYMGSHPDCGKNSINYGSYPGTQSSPR
NGARFPLEFPGMETNASYTNESATNNSTYQDQSANQGTRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIEHLKIG
DPVEFEMTYDRRTGKPIASTVSKIAPVALGDQRCIGNVTTELQASGDSQGRISYENRGECFFLPYTKDDVEGNVTLRAGD
KVSFQIATNQRGNLGACNVRLENPAHPVRYRGVVCSMKENFGFIERADVVKEIFFHFSEAKSMKEELRLGDDVEFIIQTR
NGKEVACNITKLPPGSIVFEEVSNEVVKGQVLKPLERGNAARHQNDPLNGRIRYRDSNSEPLEAPFGDKDQKGDFTLRHG
DWVQFRIATDTRDQLKRATQIMLLPESFTVSGEKREQGVIQSLKDGFGFIRCVEREPRLFFHFNEVLDVDREISVGDEVE
FTVVQDPSSSFSNTRQSAIRLKHLPTGTVTFQTIIEKDILGTVAQDTNLMEPGLINYGQQKSIIFFSKDCDPKHIPKLGD
KVMFNVVQVKRNKELVAEDIFLVNAAGEKIQNVNKKSNGQVCQGFIAALKDGFGFIETVNHDREIFFHYSNFEGDASTLE
LGADIECTISNMSNGRGSGGCVAADHVKLVPRGSIPRPTAVSEVLEGTVIRPLRSANPEQAEYAGLIKINPTNENEETPE
YEFGIMGLSNKRELLQAGDPVQLQVDSAGHACNIVAVRKKRRATVDAMKGPFGFLAYEVDEGKKLFFHASEVQDHVMLQP
GDQVEFVLVTNQRTGKSSACSVTRLSDAVQQRPERLISRLRTISLEDTGPKLTVVRQPRGPDGTRGFNQERCQRIPGAIE
E
Swiss-ProtCold shock domain-containing protein E1
SUPERFAMILYSSF50249  Nucleic acid-binding proteins superfamily     
Gene3DG3DSA:2.40.50.140     
PfamPF00313  CSD; 'Cold-shock' DNA-binding domain     
SMARTSM00357     
ProSitePatternsPS00352  COLD_SHOCK; 'Cold-shock' domain signature.     

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