Resequencing Module

New

Global resequencing data and population genomics for insect research

Resequencing Module Interface

Module Overview

The Resequencing module provides comprehensive access to global resequencing data through an intuitive search interface. This module serves as the central hub for exploring population genomics, geographic distribution, and genetic variation data.

Key Features

  • 1Filter species resequencing samples globally based on species names
  • 2Click on species names to view global resequencing sample information including geographic locations, statistics, and variation data
Resequencing Detail Interface

Resequencing Detail Information

Each species detail page provides comprehensive information about global resequencing samples with interactive maps and downloadable data.

Detail Features

  • 3View resequencing sample information on a global map with geographic distribution
  • 4Download corresponding variation data in VCF format and raw sequencing data from SRA database

Available Data Types

Geographic Data

Sample locations

Statistics

Coverage & depth

VCF Files

Variation data

SRA Data

Raw sequences

Search and Analysis Tips

Search Tips

  • Use scientific species names for most accurate results
  • Filter by taxonomic order to narrow down results
  • Use partial matches for broader search results

Data Analysis

  • Check coverage and depth statistics before analysis
  • Review geographic distribution for population studies
  • Download VCF files for variant analysis

Usage Examples

Example 1: Finding Drosophila Resequencing Data

  1. Type “Drosophila melanogaster” in the search box
  2. Click on the species name from the results
  3. View the global map showing sample locations
  4. Download VCF files and SRA data for analysis

Example 2: Population Genomics Study

  1. Search for your target species
  2. Review coverage and depth statistics
  3. Examine geographic distribution of samples
  4. Download relevant VCF files for population analysis

Data Sources and Quality

SRA Database

Raw sequencing data is sourced from the Sequence Read Archive (SRA) database, ensuring high-quality and standardized data access.

Quality Metrics

All resequencing data includes coverage, depth, and quality statistics to help researchers select appropriate samples for their studies.

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