Data -> Chilo suppressalis
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| Resource | [Genomic] [GFF3] [mRNA] [Protein] |
|---|---|
| Data source | ChiloDB |
| Publication | Yin, C. et al. ChiloDB: a genomic and transcriptome database for an important rice insect pest Chilo suppressalis. Database : the journal of biological databases and curation 2014, doi:10.1093/database/bau065 (2014). [PDF] |
| Organism strain | "Taihu" |
| Assembly | ChiloDB v1.0 |
| Genomic Size | 824 Mb |
| GC content | 35.7% |
| Number of scaffolds | 80,479 |
| Scaffold N50 | 5,216 |
| Number of contigs | 247,063 |
| Contig N50 | 2,019 |
| Gene Set | ChiloDB v1.0 |
| Gene | 10,221 |
| Protein | 10,221 |
| BioSample | SAMN01797446 |
| Submitter | Department of entomology, College of Plant Protection, Nanjing Agricultural University |
| Assembly level | Contig |
| GenBank assembly accession | GCA_000636095.1 |
| RefSeq assembly accession | n/a |
| WGS Project | ANCD01 |
| Assembly method | SOAPdenovo v. 1.05 |
| Sequencing technology | Illumina GAII |
| Tissue | midgut |
|---|---|
| Year | 2012 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 19,700,001 |
| Data accession | SRP011415 |
| Assemble software | Trnity |
| Contigs | 37,040 |
| Annotated | 15,446 |
| Reference | |
| Download | [Fasta] |
| Tissue | mixed sample |
|---|---|
| Year | 2011 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 20,899,325 |
| Data accession | SRA060774 |
| Assemble software | Trnity |
| Contigs | 69,977 |
| Annotated | 27,347 |
| Reference | |
| Download | [Fasta] |
| Tissue | larvae |
|---|---|
| Year | |
| Platform | |
| Layout | |
| Raw reads | |
| Data accession | SRR651040 |
| Assemble software | SOAPdenovo v. 1.03 |
| Contigs | 70,738 |
| Annotated | |
| Reference | |
| Download | [Fasta] |
