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Data -> Nilaparvata lugens

Organism Nilaparvata lugens
Lineage ;
Resource [Genomic]   [GFF3]   [mRNA]   [Protein]
Data source
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Publication Xue, J. et al. Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation. Genome biology 15, 521, doi:10.1186/s13059-014-0521-0 (2014).  [PDF]
Organism strain
Genomic Size 1,324 Mb
GC content 34.4%
Number of scaffolds 45,279
Scaffold N50 360,476
Number of contigs 121,136
Contig N50 23,518
Gene Set
Gene 36,723
Protein 36,723
BioSample SAMN03077662
Submitter Nilaparvata lugens Genome Consortium
Assembly level Scaffold
GenBank assembly accession GCA_000757685.1
RefSeq assembly accession n/a
WGS Project AOSB01
Assembly method SOAPdenovo v. 1.05
Sequencing technology Illumina HiSeq 2000; Illumina GA-II
Transcriptome 1
Tissue Nilaparvata lugens
Year 2010
Platform Illumina
Raw reads 8,499,031
Data accession SRR064533
Assemble software Trnity
Contigs 36,748
Annotated 20,674
Reference Xue J, Bao Y Y, Li B, et al. Transcriptome analysis of the brown planthopper Nilaparvata lugens[J]. PLOS one, 2010, 5(12): e14233.
Download   [Fasta]      
Transcriptome 2
Tissue midgut
Year 2011
Platform Roche 454
Raw reads 323,957
Data accession SRP007536
Assemble software CAP3
Contigs 8,203
Annotated 1,169
Reference Peng X, Zha W, He R, et al. Pyrosequencing the midgut transcriptome of the brown planthopper, Nilaparvata lugens[J]. Insect molecular biology, 2011, 20(6): 745-762.
Download   [Fasta]