Data -> Nilaparvata lugens
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| Resource | [Genomic] [GFF3] [mRNA] [Protein] |
|---|---|
| Data source | Notice: Undefined variable: source in /home/zju/InsectBase/data/detail.php on line 151 |
| Publication | Xue, J. et al. Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation. Genome biology 15, 521, doi:10.1186/s13059-014-0521-0 (2014). [PDF] |
| Organism strain | |
| Assembly | |
| Genomic Size | 1,324 Mb |
| GC content | 34.4% |
| Number of scaffolds | 45,279 |
| Scaffold N50 | 360,476 |
| Number of contigs | 121,136 |
| Contig N50 | 23,518 |
| Gene Set | |
| Gene | 36,723 |
| Protein | 36,723 |
| BioSample | SAMN03077662 |
| Submitter | Nilaparvata lugens Genome Consortium |
| Assembly level | Scaffold |
| GenBank assembly accession | GCA_000757685.1 |
| RefSeq assembly accession | n/a |
| WGS Project | AOSB01 |
| Assembly method | SOAPdenovo v. 1.05 |
| Sequencing technology | Illumina HiSeq 2000; Illumina GA-II |
| Tissue | Nilaparvata lugens |
|---|---|
| Year | 2010 |
| Platform | Illumina |
| Layout | PAIRED |
| Raw reads | 8,499,031 |
| Data accession | SRR064533 |
| Assemble software | Trnity |
| Contigs | 36,748 |
| Annotated | 20,674 |
| Reference | Xue J, Bao Y Y, Li B, et al. Transcriptome analysis of the brown planthopper Nilaparvata lugens[J]. PLOS one, 2010, 5(12): e14233. |
| Download | [Fasta] |
| Tissue | midgut |
|---|---|
| Year | 2011 |
| Platform | Roche 454 |
| Layout | SINGLE |
| Raw reads | 323,957 |
| Data accession | SRP007536 |
| Assemble software | CAP3 |
| Contigs | 8,203 |
| Annotated | 1,169 |
| Reference | Peng X, Zha W, He R, et al. Pyrosequencing the midgut transcriptome of the brown planthopper, Nilaparvata lugens[J]. Insect molecular biology, 2011, 20(6): 745-762. |
| Download | [Fasta] |
