Data -> Oncopeltus fasciatus
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| Resource | [Genomic] |
|---|---|
| Data source | NCBI |
| Publication | |
| Organism strain | |
| Assembly | |
| Genomic Size | 1,126 Mb |
| GC content | 38.62% |
| Number of scaffolds | 17,222 |
| Scaffold N50 | 339,960 |
| Number of contigs | 323,303 |
| Contig N50 | 4,047 |
| Gene Set | |
| Gene | |
| Protein | |
| BioSample | SAMN02645558 |
| Submitter | BCM-HGSC i5k Pilot |
| Assembly level | Scaffold |
| GenBank assembly accession | GCA_000696205.1 |
| RefSeq assembly accession | n/a |
| WGS Project | JHQO01 |
| Assembly method | AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2 |
| Sequencing technology | Illumina |
| Tissue | embryos |
|---|---|
| Year | 2011 |
| Platform | Roche 454 |
| Layout | SINGLE |
| Raw reads | 71,911 |
| Data accession | SRR057571 |
| Assemble software | Newbler |
| Contigs | 2,598 |
| Annotated | 969 |
| Reference | Vera J C, Wheat C W, Fescemyer H W, et al. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing[J]. Molecular ecology, 2008, 17(7): 1636-1647. |
| Download | [Fasta] |
| Tissue | ovary |
|---|---|
| Year | 2011 |
| Platform | Roche 454 |
| Layout | SINGLE |
| Raw reads | 65,394 |
| Data accession | SRR057570 |
| Assemble software | Newbler |
| Contigs | 2,266 |
| Annotated | 904 |
| Reference | Vera J C, Wheat C W, Fescemyer H W, et al. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing[J]. Molecular ecology, 2008, 17(7): 1636-1647. |
| Download | [Fasta] |
