Data -> Melitaea cinxia
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| Resource | [Genomic] |
|---|---|
| Data source | NCBI |
| Publication | |
| Organism strain | |
| Assembly | |
| Genomic Size | 378 Mb |
| GC content | 37.23% |
| Number of scaffolds | 8,261 |
| Scaffold N50 | 119,328 |
| Number of contigs | 49,844 |
| Contig N50 | 13,489 |
| Gene Set | |
| Gene | |
| Protein | |
| BioSample | SAMN01932438 |
| Submitter | University of Helsinki |
| Assembly level | Scaffold |
| GenBank assembly accession | GCA_000716385.1 |
| RefSeq assembly accession | n/a |
| WGS Project | APLT01 |
| Assembly method | SOAPdenovo v. 1.05 ; Newbler v. 2.6 ; MIP Scaffolder v. MARCH-2012 |
| Sequencing technology | Illumina; 454; SOLiD |
| Tissue | Melitaea cinxia |
|---|---|
| Year | 2008 |
| Platform | Roche 454 |
| Layout | SINGLE |
| Raw reads | 595,941 |
| Data accession | SRA000207 |
| Assemble software | CAP3 |
| Contigs | 67,902 |
| Annotated | 17,216 |
| Reference | Vera J C, Wheat C W, Fescemyer H W, et al. Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing[J]. Molecular ecology, 2008, 17(7): 1636-1647. |
| Download | [Fasta] |
