Data -> Belgica antarctica
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| Resource | [Genomic] |
|---|---|
| Data source | NCBI |
| Publication | Kelley, J. L. et al. Compact genome of the Antarctic midge is likely an adaptation to an extreme environment. Nature communications 5, 4611, doi:10.1038/ncomms5611 (2014). [PDF] |
| Organism strain | |
| Assembly | |
| Genomic Size | 87 Mb |
| GC content | 42.40% |
| Number of scaffolds | 4,997 |
| Scaffold N50 | 98,264 |
| Number of contigs | 22,152 |
| Contig N50 | 13,687 |
| Gene Set | |
| Gene | |
| Protein | |
| BioSample | SAMN02950991 |
| Submitter | Stanford University |
| Assembly level | Contig |
| GenBank assembly accession | GCA_000775305.1 |
| RefSeq assembly accession | n/a |
| WGS Project | JPYR01 |
| Assembly method | Velvet v. 1.1.05; ERANGE v. June 7, 2011; PBJelly v. Jelly 14.1.14 |
| Sequencing technology | Illumina; PacBio |
| Tissue | whole body larva |
|---|---|
| Year | |
| Platform | |
| Layout | |
| Raw reads | |
| Data accession | SRR566981 SRR567164 SRR567165 SRR567166 SRR567167 SRR567169 SRR567170 SRR567171 SRR567289 |
| Assemble software | Cufflinks 1.3.0; TopHat 1.4.1; MAKER 2.10; Bowtie 0.12.5 |
| Contigs | 13,259 |
| Annotated | |
| Reference | |
| Download | [Fasta] |
