Species tree

• 1. Species tree

  User can use  species tree  to get a general overview of the database, including species information and their evolutionary relationships.

• 2. Species name

  Clicking on the species name will access to the species information page.

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Species page

Clicking on the species name will access to the species information page. In the (1) basic information section, users can get the basic description of the insect and links to Wikipedia and NCBI. JBrowse button can access to the (2) JBrowse page. The numbers of (3, 4) sex chromosome genes and sex-biased genes are also presented. In the (5, 6) data download section, users can download the sex chromosome sequences, annotations, protein sequences, CDS information, and gene and protein sequences for sex-biased genes.

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Sex chromosome genes list

Clicking on the Chr Gene List under the Sex Chromosome Genes section to access the Sex Chromosome Genes page. Clicking on (1) Species name can return to the species page. The page includes the (3) gene names, (4) brief descriptions of genes and (5) sex chromosome locations. User can also quickly find the target gene by (2) searching the gene name or gene description.

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Sex-Biased genes list

Clicking on the Sex-Biased Gene List will access to the Sex Biased genes page. User can choose to view the Sex-Biased genes by males and females. The data can also be filtered by selecting the setting parameter of the biased type, tissue type and the range of log2foldchange and padj.

Sex Chrs

The Sex Chrs page displays (3) sex chromosome sequence and annotations for each (2) species. User can download the sex chrsomosome sequences and annotations.

Sex Chr genes

The Sex Chr Genes page allows user browsing of genes on the X, Y, Z and W chromosomes.

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Gene list

Clicking on the gene name, user can also perform a quick search for genes by selecting the species type, gene name and gene description. (2)

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Gene page

• Clicking on the gene name will enter the gene page with basic information including organism, locus, Protein ID, Swissprot ID, KEGG, OrthoDB ID and etc. (2)
• There is a breadcrumb on the top that you can access to other page. (1)
• Clicking on the species name will take user back to the species description pages. User can download the gene sequences and protein sequences from download option. (3)
• Gene ontology information is also show in the page, you can click GO group that you like. (4)
• Finally, there will show publications recently in PubMed updated in real time. (5)

Sex Chr ncRNA

The Sex Chr ncRNA page shows numbers of different ncRNA of each species, and can easily download ncRNA file.

Sex Chr Repeat

The Sex Chr Repeat page allows user download repeat file of each species.

Sex-Biased genes

Clicking on the Sex-Biased gene column will access to the Sex Biased genes page.

• User can choose to view the Sex-Biased genes by males and females. (1)
• The data can also be filtered by selecting the setting parameter of the biased type, tissue type and the range of log2foldchange and padj. (2)

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Sex-Biased gene page

Clicking on the gene name under Gene Symbol column on Sex-Biased gene page.

• The basic information includes organism, RefGene ID, locus, protein ID, Swissprot ID, KEGG, gene name, gene description and etc. (2)
• Download CDS or protein sequence. (3)
• Gene ontology information. (4)
• Gene expression information, include sample, log2foldchange and padj. (5)
• Showing publications recently in PubMed updated in real time. (6)

JBrowse

In this page, users can use JBrowse to browse genes in genome.

• Access to the species page. (1)
• Select which species to show. (2)
• JBrowse. (3)

BLAST

Select the blast program ( blastn, blastp, tblastn, blastx. default: blastn )

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Select evlaue ( 1e-5, 1e-3, 1e-1, 1. default: 1e-5 )

Use our example sequence to blast. (3)

Download

• 1. Species name

  Access to the species page.

• 2. Sex chromosome file download

  Download sex chromosome sequence and annotation.

• 3. Sex chromosome ncRNA file download

  Download sex chromosome ncRNA file.

• 4. Sex chromosome repeat file download

  Download sex chromosome repeat gff and repeat tbl.

• 5. Sex-Biased file download

  Download CDS, protein, annotation of sex-biased genes.